PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G45990.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 550aa    MW: 59258.3 Da    PI: 8.0368
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G45990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.84.9e-103273641954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  OB01G45990.1 327 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 364
                   554459******************************88 PP
2BELL95.93.5e-31192261372
          BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   +e q kk+kL+s++eeV+krY+qy++q+q+v++sFe+vag  +a+p+++lAl+a+++hF+cLk +i +q+
  OB01G45990.1 192 AEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMAKHFKCLKCMILNQL 261
                   5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.5E-35117259IPR006563POX domain
PfamPF075264.9E-36122257IPR006563POX domain
PROSITE profilePS5007112.228305368IPR001356Homeobox domain
CDDcd000861.85E-13308369No hitNo description
SMARTSM003897.4E-11308372IPR001356Homeobox domain
SuperFamilySSF466893.51E-17310377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28311372IPR009057Homeodomain-like
PfamPF059205.7E-19325364IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MYHVPQHSRR EKLRFPQDAG DSPPPHGHAP QQQQHGSWPP APAFYSYASS SSSYSPHSPT  60
LAQAQLVAHG LAPPLPQIPT QNFSLSLSSA SSNPPPPQPR RQLGGLAQAT GPFGPFTGYA  120
AVLGRSRFLG PAEKLFEEIC DVGGASAHVD RTISDEGLLD ADPMDGVDHD AIDHDLGGVD  180
RAAADAGPIS GAEQQWKKTK LISMMEEVCK RYRQYYQQVQ AVMASFETVA GFSNAAPFAA  240
LALRAMAKHF KCLKCMILNQ LRNTSNKVAV KDGLTKDIAV FGLAGGSGGG GLQRGNSASA  300
FGQPHNIWRP QRGLPERAVS VLRAWLFEHF LHPYPTDGDK QMLAKQTGLT RNQVSNWFIN  360
ARVRLWKPMV EEIHNLEMRQ MHKHSVVDKG QHSVHHQAPQ HSSQCSGKPS DPSDSHPGQS  420
SSITRNHNTA GSQGFPDELS QMSQSIQGQV SFAYNGLSSQ HNIASPHQHQ QVGGGVGIGG  480
GNGGVSLTLG LHQNNRVCIA EPLPAALPAN LAHRFGLEEV SDAYVMSSFG GQDRHFGKEI  540
GGHLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17314371158Homeobox protein Meis1
4xrs_B9e-17314371158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G45990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0713310.0AB071331.1 Oryza sativa Japonica Group qSH-1 mRNA for qSH-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688150.10.0PREDICTED: BEL1-like homeodomain protein 9, partial
TrEMBLJ3L5U30.0J3L5U3_ORYBR; Uncharacterized protein
STRINGOB01G45990.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-61BEL1-like homeodomain 8