PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G30040.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 433aa    MW: 45824.5 Da    PI: 4.9429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G30040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12248293555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h + Er+RR+++N++f++Lr+llP++      K +K ++L  A +Y+k L+
  OB01G30040.1 248 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKTLE 293
                   7789*********************9.....699**************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-16242310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.932243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-12248296No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15248310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10248293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-11249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEDVWCSLEE EIAAGIQDHQ PPPPDLHDPS FWPAFAECAA SFIAGGDGDN ACFAGVADVD  60
LMGDDCRAVA MDDDGDGGFF VGEAAEHLML TSSPSSLSSS RRSLSIDSAG SMSSFSLDAA  120
AALSAVVPQY QLAPPGLFAP APADDHDDAI XXXXXXXXAP PSSSGGSASS PTPFSRDSAP  180
PQPAMAPQPH QQTPRAGSSA GHVVVKSSTS SCSSSILAVP PEKAGGRGQQ PQPEEARAAA  240
GNNSQLYHMM SERKRREKLN DSFHTLRSLL PPCSKKDKTT VLINAAKYLK TLEAEITGLE  300
GKNSKLEQHI DGGGGLDAAM RARRAQQRAK VQISKEDSPE QQLVNLTVMV MVECDVVELV  360
LHILGCLRWM KHVSVLSVDA DTYSPQLLLK AIASIKLHIM GGDWNEASFH EAMTKAANDA  420
TLSCAPHRLA LTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256ERKRRE
2252257RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G30040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063330.0AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694503.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102710082
TrEMBLJ3L1980.0J3L198_ORYBR; Uncharacterized protein
STRINGOB01G30040.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-23bHLH family protein