PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G16120.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 450aa    MW: 47367.9 Da    PI: 6.6687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G16120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.1e-12267312555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  OB01G16120.1 267 HMISERKRREKLNDSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 312
                   8899********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-16261330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.195262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-12264316No hitNo description
Gene3DG3DSA:4.10.280.101.3E-12265310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146864.21E-4303334No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-4311334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MACMQLTDRY NEQITDRSIS RVMDSSSSSW IHVYAGAGAG GNNGFMCGYA ASCNPGEFEQ  60
QQVVVSSQIQ DQLNQISMHM SMDDESAVYD GASMVEVDDL LMTSSAHHGG CFTSSSSSSA  120
SFPSASVSCS PESPESSAAA HVLGAPAAAA AGFLYPEVSS QAAPLPLRRP PLVPYEPEPQ  180
HQCHGSYTDL QSPASGRGAF KRYARHLGPR RPPNKAPGQR MFKTAMSVLA KMHVAMTYSR  240
QYYYQQAAGG GGGGGAPEPP SGNQLQHMIS ERKRREKLND SFVALKAVLP PGSKKDKTSI  300
LIRAREYVKS LESKLSELEK KNRELEARLA MAKNDGSETA AAAAAAPDAA GDDTKREDEL  360
VEIELTSGGA GAAVGSGQDE ETCCTLNVAV TPPPSRRGGG GGMSTTDVVL RTLQCLREQI  420
GDGASLGAMS TSAGSGGRPP RANLTLQLKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275ERKRRE
2271276RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G16120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029641e-100AK102964.1 Oryza sativa Japonica Group cDNA clone:J033115I17, full insert sequence.
GenBankHQ8588701e-100HQ858870.1 Oryza sativa Japonica Group isolate UT1679 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645600.10.0PREDICTED: uncharacterized protein LOC102700011
TrEMBLJ3KXA60.0J3KXA6_ORYBR; Uncharacterized protein
STRINGOB01G16120.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-18bHLH family protein