PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf17255g00011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 442aa MW: 51982.8 Da PI: 6.0483

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf17255g00011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.1e-22	60	141	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn YAk GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHn Niben101Scf17255g00011.1 60 FYNCYAKVQGFGVRVSNTWYR-KSRERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENKRWRIIEVELEHN 138 9*************99997.66679**********99888.....******************************** PP FAR1 87 Hel 89 H + Niben101Scf17255g00011.1 139 HLV 141 *76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-19	60	142	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDGLSLNVES IFDDETEEFE IDGECAMTEY VGQSGVIEGE NPVPPAVGME FETYEDVYYF 60 YNCYAKVQGF GVRVSNTWYR KSRERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMENKRWRI IEVELEHNHL VNPSTEKFYK SQRHISSGSK RPLQMDANQH IQKIRLFRTV 180 IIYPDDDGKL NIDEEEFEAA WEDMILCHGI RDHKWLQTLH DDRKHWASVY LKDTLLAGMV 240 SVILSEKEAS PFDEYLANHT SLKVFLNSYN QCLKEIYQRE ALADTESRNS SFMLKSRFYC 300 EMQLSKVYTN HIFEKFQIEV EGMFSCLSTR QVSIDGSVVT YIVKEHEVEN VKEARDYENS 360 FEEIPPQYIL SRWRKDIHRI YILDYGCNLI DTKNPVHRYD NLYKCAVKLV EEGRKSRERY 420 KFTLEALGEI LNKFSLQDHN TL

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDGLSLNVES IFDDETEEFE IDGECAMTEY VGQSGVIEGE NPVPPAVGME FETYEDVYYF  60
YNCYAKVQGF GVRVSNTWYR KSRERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMENKRWRI IEVELEHNHL VNPSTEKFYK SQRHISSGSK RPLQMDANQH IQKIRLFRTV  180
IIYPDDDGKL NIDEEEFEAA WEDMILCHGI RDHKWLQTLH DDRKHWASVY LKDTLLAGMV  240
SVILSEKEAS PFDEYLANHT SLKVFLNSYN QCLKEIYQRE ALADTESRNS SFMLKSRFYC  300
EMQLSKVYTN HIFEKFQIEV EGMFSCLSTR QVSIDGSVVT YIVKEHEVEN VKEARDYENS  360
FEEIPPQYIL SRWRKDIHRI YILDYGCNLI DTKNPVHRYD NLYKCAVKLV EEGRKSRERY  420
KFTLEALGEI LNKFSLQDHN TL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016447989.1	1e-164	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	B9RVA1	1e-173	B9RVA1_RICCO; Uncharacterized protein
STRING	XP_002517670.1	1e-174	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	5e-50	FAR1-related sequence 8