PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf14083g01010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 376aa MW: 41347.2 Da PI: 7.998

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf14083g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	23.9	1.2e-07	52	86	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C CGn a+ C ++ C+ CC C+ hv Niben101Scf14083g01010.1 52 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHV 86 568*******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MAGAASSPAL SNHSADSAPS PASAAAATTV IPAVVSSHPT INASKNLRGL NKPKCIKCGN 60 VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKLPSS GSPVVDQQST ESPHSGSSHR 120 GTASLRQLST NFAQFNNLQT PLRSRKPLTR KDAQLINEWR FMKLKEYRDS NIAAENEAFD 180 RYMQNVGLLE EVFAVNSAKD EKNEDGSTGD DNEATVNQFK LQLRSDPTRI ENTRKRMQYI 240 VDQGLRKLRK LDSGDNATDL SDRDALGKKK KAKSAEAELV VSFTDLIDKL NKARNEEDLK 300 ACWEMKSQLF NQNKKEKQAE SDDAEASIEQ SSKASVMPTM PSGNSPPKWF STSTIDDEEL 360 RRLNAQFDSL EDIEEL

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MAGAASSPAL SNHSADSAPS PASAAAATTV IPAVVSSHPT INASKNLRGL NKPKCIKCGN  60
VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKLPSS GSPVVDQQST ESPHSGSSHR  120
GTASLRQLST NFAQFNNLQT PLRSRKPLTR KDAQLINEWR FMKLKEYRDS NIAAENEAFD  180
RYMQNVGLLE EVFAVNSAKD EKNEDGSTGD DNEATVNQFK LQLRSDPTRI ENTRKRMQYI  240
VDQGLRKLRK LDSGDNATDL SDRDALGKKK KAKSAEAELV VSFTDLIDKL NKARNEEDLK  300
ACWEMKSQLF NQNKKEKQAE SDDAEASIEQ SSKASVMPTM PSGNSPPKWF STSTIDDEEL  360
RRLNAQFDSL EDIEEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786844.1	0.0	PREDICTED: uncharacterized protein LOC104234898 isoform X1
TrEMBL	A0A1U7XIQ8	0.0	A0A1U7XIQ8_NICSY; uncharacterized protein LOC104234898 isoform X1
STRING	XP_009786844.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8544	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	6e-92