PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf10968g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 822aa MW: 93313.6 Da PI: 5.6351

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf10968g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50	5.9e-16	633	677	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv ++LKr CR y I RWP+ k Niben101Scf10968g00007.1 633 GISRSVLEEQFGKKLSDAAKSLGVARSTLKRMCRDYDIYRWPRSK 677 6999**************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.82	618	703	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	2.6E-4	619	669	IPR009057	Homeodomain-like
Pfam	PF02042	4.1E-13	634	677	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.4E-15	735	819	No hit	No description
SuperFamily	SSF54277	5.23E-17	735	820	No hit	No description
PROSITE profile	PS51745	19.926	738	822	IPR000270	PB1 domain
SMART	SM00666	6.6E-16	738	821	IPR000270	PB1 domain
Pfam	PF00564	8.3E-15	738	820	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence Send to blast
MPIELKFSYR KRNDGINRWV FWTQHNGDEL NQVKSLLPIL RDSTQPDTNG DSQLNRLTIK 60 NLVELLDVQG TCLIQFWAPI RINGGKTFLT TADQPFAFNG KIHEGLWAYR RVSLHTIAFV 120 DATKIDETKR IHVHGRPARV FRSGMPEFSP HVRYYYMDEY PLRDFAMCLG VGCYWTLPVF 180 ESSGDRCIGV LEYAFEANDG LDLYSTLDRL INNHRILKTM GLALIPSWLA CPQEIQEVWE 240 QELAQVKEAL EVTCKTHMLL FAQTWIPVLD SSRTQMVITS PTTKYWSEEI SSLEFLAVSD 300 LHHVQIGQGL VGKVLSSKGS CFCSDITQLS IDFYPLVPIA RCAGFTACFA IFVRLNSACH 360 MVLEFFLPRD ETLDRNPQSF LSKLLATIRE QLPSFFLDSG PSLFVEVIRT APVDELDSFE 420 ISQSQQEVRS KGNEKMVLFD SLNQDSADLG PSSSTDTGAY YMEIAKDTPD NGEKTVLPDS 480 AHKQGVEEAD GMDKEKSSVH FMLATSFVDS EQNLQQNLST DKALLDEKLN SFKIGHLQLP 540 TMVQYDTIHQ IFSSSSSDLE EIVTVDYGRD AQMNLQSKKR GESTQPDSAH QQRVEEADVE 600 DKRRHSVHIE ENANSHNCPE KHKRIKRIEK EYGISRSVLE EQFGKKLSDA AKSLGVARST 660 LKRMCRDYDI YRWPRSKSAN DVCSLSENKP VERVEKQTGN SSREYLQLPH ASLSNGMDTT 720 TTLTQRKVSM ATFQSDNTMS VKVTYKDVTI RFPLSLSSGK IDLETEVEKR LKLVQVGSYS 780 IKYEDEDNDW IAITCDSDLE YGIHTLRSLG RTTMKMLVEP LN

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence Send to blast

MPIELKFSYR KRNDGINRWV FWTQHNGDEL NQVKSLLPIL RDSTQPDTNG DSQLNRLTIK  60
NLVELLDVQG TCLIQFWAPI RINGGKTFLT TADQPFAFNG KIHEGLWAYR RVSLHTIAFV  120
DATKIDETKR IHVHGRPARV FRSGMPEFSP HVRYYYMDEY PLRDFAMCLG VGCYWTLPVF  180
ESSGDRCIGV LEYAFEANDG LDLYSTLDRL INNHRILKTM GLALIPSWLA CPQEIQEVWE  240
QELAQVKEAL EVTCKTHMLL FAQTWIPVLD SSRTQMVITS PTTKYWSEEI SSLEFLAVSD  300
LHHVQIGQGL VGKVLSSKGS CFCSDITQLS IDFYPLVPIA RCAGFTACFA IFVRLNSACH  360
MVLEFFLPRD ETLDRNPQSF LSKLLATIRE QLPSFFLDSG PSLFVEVIRT APVDELDSFE  420
ISQSQQEVRS KGNEKMVLFD SLNQDSADLG PSSSTDTGAY YMEIAKDTPD NGEKTVLPDS  480
AHKQGVEEAD GMDKEKSSVH FMLATSFVDS EQNLQQNLST DKALLDEKLN SFKIGHLQLP  540
TMVQYDTIHQ IFSSSSSDLE EIVTVDYGRD AQMNLQSKKR GESTQPDSAH QQRVEEADVE  600
DKRRHSVHIE ENANSHNCPE KHKRIKRIEK EYGISRSVLE EQFGKKLSDA AKSLGVARST  660
LKRMCRDYDI YRWPRSKSAN DVCSLSENKP VERVEKQTGN SSREYLQLPH ASLSNGMDTT  720
TTLTQRKVSM ATFQSDNTMS VKVTYKDVTI RFPLSLSSGK IDLETEVEKR LKLVQVGSYS  780
IKYEDEDNDW IAITCDSDLE YGIHTLRSLG RTTMKMLVEP LN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783722.1	0.0	PREDICTED: protein NLP7-like isoform X4
TrEMBL	A0A1U7WUY0	0.0	A0A1U7WUY0_NICSY; protein NLP7-like isoform X4
STRING	XP_009783719.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13981	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-41	NIN like protein 7