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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08060g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 40785.3 Da PI: 4.8894 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.7e-20 | 92 | 142 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+fgta eAa a+++a+++++g Niben101Scf08060g00005.1 92 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGTAIEAALAYDEAARAMYG 142 56*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.19E-30 | 92 | 151 | No hit | No description |
Pfam | PF00847 | 2.0E-14 | 92 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-20 | 93 | 150 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.8E-36 | 93 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-30 | 93 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.85 | 93 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 94 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 116 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MSSDYSERNQ KMAILDQAPK MTSLPLDCSR KRKSRSRRDG TKNVEERLAK WKEYNQKLHC 60 VDDEGKPVRK VPAKGSKKGC MKGKGGPENS RCNYRGVRQR TWGKWVAEIR EPNRGSRLWL 120 GTFGTAIEAA LAYDEAARAM YGPCARLNLP NYPSSKELSK DDSSWATTSA SDSTAGSSLS 180 EVCPAGELKG FSEIKFEDGE GESRTDSATT AIHEAGTPLS SEKHEAKSKM GVVEAKEEPR 240 SIESIDHDML KSGQDYLDNL NWDEMFDVEE LLGMLDSAPA GAPSFMQDFG SIAGQKEQYA 300 YNNNQLSNSS FQQQNTDHKL LGGTQQMEQQ APIAVDYGFD FLKPGREEDL NFSLDDLALM 360 DLDSELGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-16 | 93 | 150 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 33 | SRKRKS |
2 | 31 | 38 | RKSRSRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764492.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2A-like | ||||
Refseq | XP_016497887.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | A0A1S4C9G9 | 0.0 | A0A1S4C9G9_TOBAC; dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | A0A1U7V8W4 | 0.0 | A0A1U7V8W4_NICSY; dehydration-responsive element-binding protein 2A-like | ||||
STRING | XP_009764492.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.1 | 2e-36 | DRE-binding protein 2A |