PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06502g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 266aa    MW: 30609.9 Da    PI: 8.9604
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06502g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.41.1e-2174122554
                   G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                               +Wt eLH++F+eav+qL G+ +  Pk+ilelm+v+gLt+ +v+SHLQk R
  Niben101Scf06502g00006.1  74 EWTLELHAKFLEAVAQL-GEGRCYPKEILELMDVPGLTRMQVASHLQKCR 122
                               7****************.9*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.75964126IPR017930Myb domain
SuperFamilySSF466892.27E-1569122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-2170123IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1873123IPR006447Myb domain, plants
PfamPF002497.4E-774121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MIINVGDDDE ICDEQGEKSM VNDEEQDNNH EVESSESNGK YKLRKKRGRK NTKEANHGDS  60
HSSTKSVKRK VCTEWTLELH AKFLEAVAQL GEGRCYPKEI LELMDVPGLT RMQVASHLQK  120
CRNDNWRAPK KRKPSRNSSG QGSSRGSQQR SGIRKFGSMP RIQPNIVTNL QQQQRDQEIN  180
QRIPPEFQFP PLNNSSIIAR EESSTQQEQA YHSQLPYVEP QYLSIGSPFN NSNFIQNNAG  240
DFLQQQKKWN FCWNDGPRTR PNNWGH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238289.11e-143PREDICTED: two-component response regulator ARR1-like
TrEMBLA0A1J6J4W61e-140A0A1J6J4W6_NICAT; Two-component response regulator arr1
STRINGXP_009798262.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-15response regulator 2