PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06493g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27175.8 Da    PI: 10.1642
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06493g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.4e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs+++kl+eyss
  Niben101Scf06493g01013.1  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKDKLFEYSS 59
                              79***********************************************96 PP
2K-box88.99.5e-3076164290
                     K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                               ++++ +++e+  +e+++ e+ kL ++ie Lqr++Rh+ G+dL++Lsl+eLq+Leqq++++lk+iRs+Kn+l++e+i+elqkk k+
  Niben101Scf06493g01013.1  76 AERKLNANEADPTENWTLEYPKLMSRIELLQRNIRHYTGQDLDPLSLRELQSLEQQVDTALKRIRSRKNQLMHESISELQKKLKD 160
                               5566777888889*********************************************************************998 PP

                     K-box  87 lqee 90 
                                +++
  Niben101Scf06493g01013.1 161 KDKK 164
                               7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.978161IPR002100Transcription factor, MADS-box
CDDcd002651.71E-39276No hitNo description
SuperFamilySSF554551.96E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-2483162IPR002487Transcription factor, K-box
PROSITE profilePS5129714.44988175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KDKLFEYSSD  60
SSMESILERY ERYSYAERKL NANEADPTEN WTLEYPKLMS RIELLQRNIR HYTGQDLDPL  120
SLRELQSLEQ QVDTALKRIR SRKNQLMHES ISELQKKLKD KDKKQSGQTQ PTSGQNFAIF  180
MLPQQPPPQS RQLPNLTIGG PFEATRVRNR DGGQAHYGSN SLVPPWMIRH VNTDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-21174173MEF2 CHIMERA
6byy_B8e-21174173MEF2 CHIMERA
6byy_C8e-21174173MEF2 CHIMERA
6byy_D8e-21174173MEF2 CHIMERA
6bz1_A9e-21174173MEF2 CHIMERA
6bz1_B9e-21174173MEF2 CHIMERA
6bz1_C9e-21174173MEF2 CHIMERA
6bz1_D9e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608614.11e-149PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X4
RefseqXP_016466964.11e-149PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN61e-100FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1S3ZRN01e-148A0A1S3ZRN0_TOBAC; truncated transcription factor CAULIFLOWER A-like isoform X2
STRINGXP_009608611.11e-148(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-71MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]