PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06155g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 437aa    MW: 48207.9 Da    PI: 6.1997
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06155g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.72.7e-33249303155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k r+rWtpeLHe Fveav++LGGsekAtPk +l+lm+v+gLt++hvkSHLQkYR+
  Niben101Scf06155g00001.1 249 KSRMRWTPELHEVFVEAVSKLGGSEKATPKGVLKLMNVEGLTIYHVKSHLQKYRT 303
                               68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.873246306IPR017930Myb domain
SuperFamilySSF466895.2E-18247303IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30248305IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-25249303IPR006447Myb domain, plants
PfamPF002496.0E-10251302IPR001005SANT/Myb domain
PfamPF143791.6E-9334356IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MKMRRALCIQ RSNEVQHNNM GISGAMSTSL SILPSLEEKY LKLPDSLHVL TETEQSINLI  60
SSRAIPLASN SGTVGHQLSS TSGPHKDFHF SPASSQESRP RSYPFISSEV SATICQSSLS  120
RLCSSSLDNY PMRNNNNSWG KDAYHELTDF PTNVPVQNGQ VENLQVVMAS DDHTKRPDWQ  180
EWADQLINDD DALGSSWIEH LVDVNLLDSE PKLLGASEVL AFQPQHPPIV PSGQSCPVGS  240
PSSLTALTKS RMRWTPELHE VFVEAVSKLG GSEKATPKGV LKLMNVEGLT IYHVKSHLQK  300
YRTARYKPEP SEGIPEKKPT SVTEMPSLDL KATMGITETL RMQMEVQKQL HEQLEVYEHP  360
LPSTKTKHSP PNDKSEALEQ DPVSSNDASS SAGEFTHGKN KEGNSLQRKT CEDQGSDVRD  420
LCSPPSKRAK TEETSAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-30249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-30249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-30249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-30249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-30249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-30249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-30249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-30249307260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245647.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBLA0A1J6IE420.0A0A1J6IE42_NICAT; Protein phosphate starvation response 1
STRINGXP_009591732.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45822139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.13e-70phosphate starvation response 1