PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05948g04001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 329aa MW: 37038.5 Da PI: 5.4257

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05948g04001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	33.2	1.4e-10	43	119	2	99
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl k++e+led+e++ +i+w+++++sf+++d+++fa +vLpk + + gFkkv + + e+++++F Niben101Scf05948g04001.1 43 FLLKTFEMLEDPETDPFIHWTSSKTSFLITDTNKFAIEVLPKKNESQ------------GFKKVCSYK---------SEYANPWF 106 9***************************************9753332............566665555.........34666666 PP XXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikr 99 + gkk+ l++ik Niben101Scf05948g04001.1 107 RGGKKHWLKNIKS 119 6666666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.4E-11	38	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.4E-16	39	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.35E-16	39	119	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-8	43	119	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MENNNQENAE NGAAIIGLEG RRGGGAGRGM RLTGLRGVSP PPFLLKTFEM LEDPETDPFI 60 HWTSSKTSFL ITDTNKFAIE VLPKKNESQG FKKVCSYKSE YANPWFRGGK KHWLKNIKSR 120 IQLSKTNKPQ QGSHSSCVDP MKDNLEEEVE KLRNDNISLK IELQKLKDRQ ENMRALFPTL 180 KGCRKDTEIS NILKLFVKKS KVREDSSSND TRKRPPMVES PDRVANSVQD GIGQTSNSAG 240 GSVSSNEQQK EEATAKNDKN REFWEKLFED DSESQNEEAE SEQALNRSKA MAEIEEMVES 300 KIAMEGEALI AKAAAGLDEE MEAYLQLWT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262857.1	0.0	PREDICTED: heat stress transcription factor A-7a-like
TrEMBL	A0A1U7UXQ1	0.0	A0A1U7UXQ1_NICSY; heat stress transcription factor A-7a-like
STRING	XP_009757521.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12970	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-28	heat shock transcription factor A2