PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05584g02016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 413aa    MW: 44408.5 Da    PI: 9.7277
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05584g02016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.96.9e-21270332163
                               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               e+e+kre+rkq+NRe+ArrsR+RK+ae e L+ +v++L++eN  Lk+e+++ +++++klk e+
  Niben101Scf05584g02016.1 270 EREIKREKRKQSNRESARRSRLRKQAEAEDLAIRVQSLTSENLGLKSEINKFTENSEKLKLEN 332
                               89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-20582IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.0E-17123251No hitNo description
Gene3DG3DSA:1.20.5.1709.6E-15264329No hitNo description
SMARTSM003382.3E-18270334IPR004827Basic-leucine zipper domain
PfamPF001701.6E-19270332IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.105272335IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-10274324No hitNo description
CDDcd147021.53E-16275323No hitNo description
PROSITE patternPS000360277292IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGNSEEGKSC KPEKSSSTAA LNVQAYYGHR VAVSPFVNSP VAPGHAPHPY MWGPLQPMIP  60
PYGAPYAGIY AHGGVYAHPG VPIVSRPQAH GMTSSPADSQ TMDAASLSMD TSVKSLENTD  120
QRTSKLKGSN GLGVSIGNCS VDNGDGTDNG PSQSGHTEGS SDGSNIHTAE VGENSKKRSR  180
EITSNDSGDA KTRTRSSPQP REVIGATKKE TSIAVNPANI AEKVVGTVFS PTMTTTLELR  240
NPVGTLVKAS PTNVSRIGPA VPAEAWLQNE REIKREKRKQ SNRESARRSR LRKQAEAEDL  300
AIRVQSLTSE NLGLKSEINK FTENSEKLKL ENAALMERLK NKRRGKAEEV TLGKIDDKRL  360
QPVSTADLLA RVNNSCPLDR TIDDSEIREN NTSGAKLHQL LDASRRNDAV AAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286292RRSRLRK
2286293RRSRLRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249320.10.0PREDICTED: transcriptional activator TAF-1-like isoform X2
TrEMBLA0A1J6IY510.0A0A1J6IY51_NICAT; Transcriptional activator taf-1
STRINGXP_009788641.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-78G-box binding factor 3