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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04366g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 340aa MW: 37695.4 Da PI: 9.9589 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.1 | 3e-42 | 90 | 215 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasns 85 + +kdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL++++k ai elt++ + +++ +ess ++s+s Niben101Scf04366g00007.1 90 PMRKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFTNSKLAIEELTSQmN-TTS---PNESSAAKKSTS 170 579*************************************************************52.333...234455555555 PP TCP 86 ssgkaaksaakskksqksaasalnlakesrakarararertrekm 130 +++++++ + +q+++a + + +esrakarararert +k Niben101Scf04366g00007.1 171 AINSECEDVFLARAKQEEEAILNLVVRESRAKARARARERTIKKV 215 666777777777777777775555566**************8875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 34.527 | 92 | 150 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-35 | 92 | 215 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 10.869 | 197 | 214 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MFPSGNSSGN PILQFSIPSF HSSNSSFLGL NGNQILLHQH QDQLSTHYLA ANNGHLIDNN 60 SSVMFANNVI HNKSNNQEIS FPLNKMMKKP MRKDRHSKIL TSQGHRDRRV RLSIGVARKF 120 FDLQDMLGFD KPSKTLDWLF TNSKLAIEEL TSQMNTTSPN ESSAAKKSTS AINSECEDVF 180 LARAKQEEEA ILNLVVRESR AKARARARER TIKKVWSQIE AKINSSSVVV KEQTKIDEIK 240 EMIHGSVLVE RKNIKSSSST LGFHHPNLSG TEEAAANSNY NSSSSSTGNW DHDINRTIMN 300 SSLSAVMASI SASSQEVPSV FVYANPSEPL ALDVMARFSA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793865.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA | ||||
Refseq | XP_009793866.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA | ||||
Refseq | XP_009793867.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA | ||||
Refseq | XP_009793868.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA | ||||
Refseq | XP_016445375.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
Refseq | XP_016445376.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A1S3XZY9 | 0.0 | A0A1S3XZY9_TOBAC; transcription factor CYCLOIDEA-like | ||||
TrEMBL | A0A1U7XP94 | 0.0 | A0A1U7XP94_NICSY; transcription factor CYCLOIDEA | ||||
STRING | XP_009793865.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 9e-31 | TCP family protein |