PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf04190g00008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 356aa MW: 39187.8 Da PI: 7.7373

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04190g00008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	22.9	2.4e-07	52	129	5	80
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv.kstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelks 80 + +C CGn a+ C ++ C+ CC C+ hv k +k ++r + ++s++ a+ ++ +++ r+r+ + Niben101Scf04190g00008.1 52 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHVlKGGSTLPDKSSHRgAASVRQLSTNFAQFNNLQTPLRSRKPLT 129 568*******************************94333333345555523333344444444444444444444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.4E-4	54	119	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAAAASSPAL SNHSADSAPS PASASAAPTV TPAVVSSHPT INASKNLRGL NKPKCIKCGN 60 VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKSSHR GAASVRQLST NFAQFNNLQT 120 PLRSRKPLTR KDAQLINEWR FMKLKEYRES NIAAENEAFD RYMQNVGLLE EVFAVNSAED 180 EKNEHGSTGD DNEATVNRLK LQLRSDATRI ENTRKRMQYI VDQGLRKLRK LDSGDNATDL 240 SDLDALGKKK KAQSAEAEWV VSFTDLIDKL NKARNEEDLK ACWQMKSQLF NQNNKEKQAE 300 SDNAEASIEL SSKASAMPTM PSGNSPPKWF STTTIDDDEL GQLNAQFDSL EDIEEL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAAAASSPAL SNHSADSAPS PASASAAPTV TPAVVSSHPT INASKNLRGL NKPKCIKCGN  60
VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKSSHR GAASVRQLST NFAQFNNLQT  120
PLRSRKPLTR KDAQLINEWR FMKLKEYRES NIAAENEAFD RYMQNVGLLE EVFAVNSAED  180
EKNEHGSTGD DNEATVNRLK LQLRSDATRI ENTRKRMQYI VDQGLRKLRK LDSGDNATDL  240
SDLDALGKKK KAQSAEAEWV VSFTDLIDKL NKARNEEDLK ACWQMKSQLF NQNNKEKQAE  300
SDNAEASIEL SSKASAMPTM PSGNSPPKWF STTTIDDDEL GQLNAQFDSL EDIEEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786844.1	0.0	PREDICTED: uncharacterized protein LOC104234898 isoform X1
TrEMBL	A0A1U7XIQ8	0.0	A0A1U7XIQ8_NICSY; uncharacterized protein LOC104234898 isoform X1
STRING	XP_009786844.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8544	11	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	3e-90