PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02348g08004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 352aa    MW: 39758.8 Da    PI: 8.0651
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02348g08004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.5e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd +l+  + q+G+g +W + + ++g++R++k+c++rw++yl
  Niben101Scf02348g08004.1 14 KGPWSPEEDAKLKSHIDQHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62
                              79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.67966IPR017930Myb domain
SuperFamilySSF466893.02E-181198IPR009057Homeodomain-like
SMARTSM007172.4E-111364IPR001005SANT/Myb domain
PfamPF002499.2E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-231569IPR009057Homeodomain-like
CDDcd001672.56E-81662No hitNo description
PROSITE profilePS500904.6586399IPR017877Myb-like domain
SMARTSM007171.867104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-1070106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGRAPCCDKN SVKKGPWSPE EDAKLKSHID QHGTGGNWIA LPPKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSQEEDNIIL SLYISIGSRT DNDIKNYWNT KLKKKLFGKR KNLRGKSQKQ  120
GSRKGRDQIN SSMDSHNNID TNPSWSEFPI LQPIPYSNDE PRYSNDHTSI RKLLMKLGGK  180
FCDDDDKPMN GALNPQYDPM DNSLMHPIYY DSINLISAAP IGVTNTSPFT NSHEYNVDGK  240
AVCWADTDTE KRKLGERMGS DTSVALALNN GCNSTTELEN MVYTNPQKLD DLEMLYEDML  300
NNKPSTTLGG SLDWERMNNL VFPFPPLVVS NNEGHHPATL LGALNELRYH RD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-14141067108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785472.10.0PREDICTED: transcription factor RAX1-like
TrEMBLA0A1U7WZZ40.0A0A1U7WZZ4_NICSY; transcription factor RAX1-like
STRINGXP_009785472.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-59myb domain protein 36