PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01990g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 408aa    MW: 43687.7 Da    PI: 9.9087
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01990g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.63.6e-20267329163
                               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               e+e+kre+rkq+NRe+ArrsR+RK+ae e L+ +v++L++eN  Lk+e+++ ++++ klk e+
  Niben101Scf01990g00010.1 267 EREIKREKRKQSNRESARRSRLRKQAEAEDLAIRVQSLTSENVGLKSEINKFTENSVKLKLEN 329
                               89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.3E-151778IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-17118248No hitNo description
Gene3DG3DSA:1.20.5.1703.7E-16262326No hitNo description
SMARTSM003383.2E-19267331IPR004827Basic-leucine zipper domain
PfamPF001701.8E-19267329IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.852269332IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-10270326No hitNo description
CDDcd147021.25E-17272320No hitNo description
PROSITE patternPS000360274289IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGNSEEGKSC KPEKSSSTAP AYYGPRVAVP PYANSPVAPG YAPHPCMWGP LQPMMPPYVA  60
PYAGIYAHGG VYAHPGVPIV SRPQAHGMTS SPAVSQTVDA ASLSVDISAK SSENTVQRLM  120
SKSKGSNGLG MSIQNCSVDN GVGTDHGPSQ SGQTEGSSDG SNIHTAEVGE NSKKRSHETI  180
PNNSGEGKSQ TRSSPQPREV NGATKKETSI AVSPGNIAEK VAGTVFSPTM TTPLELRNPV  240
GTLAKASPTN VSRISPAVPG EVWLQNEREI KREKRKQSNR ESARRSRLRK QAEAEDLAIR  300
VQSLTSENVG LKSEINKFTE NSVKLKLENA ALIERLKNKR RGQAEEVTLG KIDDKRLQPV  360
STADLLARVN NSGPLDRTND DSEIRENNTS GTKLHQLLDR RTDAVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172176KKRSH
2283289RRSRLRK
3283290RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249320.10.0PREDICTED: transcriptional activator TAF-1-like isoform X2
SwissprotQ990891e-114CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A1J6IY510.0A0A1J6IY51_NICAT; Transcriptional activator taf-1
STRINGXP_009788641.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-79G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]