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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01956g12018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 16989.1 Da PI: 5.9433 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.7e-17 | 73 | 120 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 y+GVr+++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ Niben101Scf01956g12018.1 73 YRGVRRRP-WGKFAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFLT 120 9*******.**********44465..*********************9755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-29 | 72 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.589 | 72 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-22 | 72 | 132 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.93E-18 | 72 | 131 | No hit | No description |
SMART | SM00380 | 1.3E-34 | 72 | 136 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-12 | 72 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MNSSSLNLLY HLNFNTFSLP FNVNDSDEML LYGLLAQETT SRDGSRVVAA GSRNSNNYED 60 SISEPKPLKE RIYRGVRRRP WGKFAAEIRD STRNGIRVWL GTFDSAEAAA LAYDQAAFLT 120 RGSGAILNFP VERVVESLNG MKCYVEEAYF M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 69 | 131 | 2 | 64 | ATERF1 |
3gcc_A | 4e-27 | 69 | 131 | 2 | 64 | ATERF1 |
5wx9_A | 5e-27 | 73 | 132 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769380.1 | 2e-82 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_019256547.1 | 2e-82 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_019262776.1 | 2e-82 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 7e-48 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1J6INJ0 | 3e-81 | A0A1J6INJ0_NICAT; Ethylene-responsive transcription factor 1b | ||||
TrEMBL | A0A1U7W532 | 4e-81 | A0A1U7W532_NICSY; ethylene-responsive transcription factor 1B-like | ||||
STRING | XP_009769380.1 | 6e-82 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-38 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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