PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01777g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 366aa    MW: 41568.8 Da    PI: 4.5898
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01777g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38.1e-36361272102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+ye++ed++++ +isw++  nsf+v+d+++f++++Lpk+Fkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F
  Niben101Scf01777g02001.1  36 FLSKTYEMVEDPSTDAVISWTRARNSFIVWDSHKFSTTLLPKHFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGF 111
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                                 g+k+ll++ikr+++
  Niben101Scf01777g02001.1 112 LGGQKHLLKTIKRRRN 127
                               *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.54E-3432125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-6032125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.8E-3832125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.3E-193659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEDGVRVKRE EDGVATAVTA APLPMEGLHD VGPPPFLSKT YEMVEDPSTD AVISWTRARN  60
SFIVWDSHKF STTLLPKHFK HSNFSSFIRQ LNTYGFRKVD PDRWEFANEG FLGGQKHLLK  120
TIKRRRNVGQ SMNQQGSGPC IEIGYYGMEE ELERLKRDKN LLRTEIVKLR QQQQCTRNQI  180
VAMGEKIEST ERKQEQMMSF LAKIFSNPTF LQQYLDKCVQ RKDKQRIEVG QKRRLIMTPS  240
SENLQDLVSV VVGSDQPMNY STQDRETELT KMGSDMEMLF STALDNESSS NARSASVVTA  300
SATDMDPVPE NIWEKLLGED LISGDGAEEV LVIDQPELDV EVEDLVGTTS EWGEELDDLV  360
DQIGFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-243412527129Heat shock factor protein 1
5d5v_B2e-243412527129Heat shock factor protein 1
5d5v_D2e-243412527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799323.10.0PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotP411520.0HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A1U7Y8800.0A0A1U7Y880_NICSY; heat shock factor protein HSF30 isoform X1
STRINGXP_009799323.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-122heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]