PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01226g02017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26164.9 Da PI: 4.9913 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87 | 1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien+ rqvtfskRr+g++KKA+EL +LCdaevav++fs+tg+lye++s Niben101Scf01226g02017.1 9 KMIENTNSRQVTFSKRRQGLMKKAKELAILCDAEVAVLVFSNTGRLYEFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 66.6 | 8.7e-23 | 85 | 173 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 a + ++q e++ L++e+ L++ q +l+G++Le L++k+LqqLe+qL +++ +++kK+++ll +ie++ +e++++ en+aLr+ Niben101Scf01226g02017.1 85 AAEHEWQPEVNELRAEVALLRQMQSRLMGKELEGLNFKDLQQLEHQLTEGILAVKDKKEQVLLGKIEKSLLQEEKVSLENEALRE 169 44568******************************************************************************** PP K-box 97 klee 100 ++ee Niben101Scf01226g02017.1 170 QIEE 173 *997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.015 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.02E-42 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 4.06E-33 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.0E-26 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.0E-17 | 86 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.209 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGRGKIEIKM IENTNSRQVT FSKRRQGLMK KAKELAILCD AEVAVLVFSN TGRLYEFASS 60 SMENILSRYN KAPESSELTT IENVAAEHEW QPEVNELRAE VALLRQMQSR LMGKELEGLN 120 FKDLQQLEHQ LTEGILAVKD KKEQVLLGKI EKSLLQEEKV SLENEALREQ IEELRRSSRH 180 CQERALALEN SVCDSDTCLR LGLPVDTSQN MILPKMESTS NDAQNTMVLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
5f28_A | 7e-21 | 1 | 85 | 1 | 85 | MEF2C |
5f28_B | 7e-21 | 1 | 85 | 1 | 85 | MEF2C |
5f28_C | 7e-21 | 1 | 85 | 1 | 85 | MEF2C |
5f28_D | 7e-21 | 1 | 85 | 1 | 85 | MEF2C |
6c9l_A | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-21 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro. {ECO:0000269|PubMed:10318690, ECO:0000269|PubMed:10662856, ECO:0000269|PubMed:12226488, ECO:0000269|PubMed:12743119, ECO:0000269|PubMed:14615187, ECO:0000269|PubMed:15084721, ECO:0000269|PubMed:15686521, ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18305206, ECO:0000269|PubMed:19269998, ECO:0000269|PubMed:19767455, ECO:0000269|PubMed:8953767}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (2,4-D). Feedback loop leading to direct down-regulation by itself. {ECO:0000269|PubMed:15686521}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019223417.1 | 1e-164 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q38847 | 8e-55 | AGL15_ARATH; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A314KZ67 | 1e-162 | A0A314KZ67_NICAT; Agamous-like mads-box protein agl15 | ||||
STRING | XP_009591403.1 | 1e-161 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 3e-57 | AGAMOUS-like 15 |