PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01143g04003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27676.5 Da PI: 8.8729 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Niben101Scf01143g04003.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 101 | 1.6e-33 | 81 | 173 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 s++ +++++ ++e+ +Lk+++e Lqr+qR+llGedL++Ls k+L+qLe+qLe slk+iRs+K++++l+q+ elq++e++l e nk Niben101Scf01143g04003.1 81 SQSVTDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGTLSTKDLEQLENQLEASLKQIRSRKTQFMLDQLAELQQREQMLAESNK 165 3677889****************************************************************************** PP K-box 93 aLrkklee 100 Lr+klee Niben101Scf01143g04003.1 166 HLRRKLEE 173 *****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.34E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-34 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-28 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.309 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SSMMKTIEKY QHCSYASLEA SQSVTDTQNN YHEYLRLKAR VELLQRSQRN LLGEDLGTLS 120 TKDLEQLENQ LEASLKQIRS RKTQFMLDQL AELQQREQML AESNKHLRRK LEESAAGIPL 180 RLCWEDGTQA MQVNRLPQTE GFFQPLGLTS SPQFGYNHVG TDEVNGGASA HNMNGFIPGW 240 ML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 6e-28 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 6e-28 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 6e-28 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 6e-28 | 92 | 171 | 22 | 101 | Developmental protein SEPALLATA 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00030 | SELEX | Transfer from AT2G03710 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019229956.1 | 1e-178 | PREDICTED: MADS-box protein CMB1-like | ||||
Swissprot | Q7Y040 | 1e-156 | EJ2_SOLLC; MADS-box protein EJ2 | ||||
TrEMBL | A0A314KKR2 | 1e-177 | A0A314KKR2_NICAT; Developmental protein sepallata 1 | ||||
STRING | XP_009788128.1 | 1e-176 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.2 | 2e-95 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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