PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00929g02007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 460aa    MW: 51487.1 Da    PI: 4.8864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00929g02007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.52.4e-143112023128
                       NAM  23 vegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLv 107
                                 g++++  +vi + + y+++P++Lp     + +  +f +++++k        + tk+g+Wka+g++ e+++ +++  g ++t+ 
  Niben101Scf00929g02007.1  31 NCGSPIPD-DVIVD-NPYQYDPSNLP-----DVDGAWFLVSSNEK--------KETKHGFWKAKGESCEIFA-NSAIYGWRTTFE 99 
                               55555555.55544.78999999999.....33444455554443........34789**************.999********* PP

                       NAM 108 fykgrapkgektdWvmheyrl 128
                               f +++ap g+kt W+m+ey++
  Niben101Scf00929g02007.1 100 FVEAQAPIGQKTVWMMQEYKI 120
                               *******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.5339142IPR003441NAC domain
SuperFamilySSF1019412.75E-2017140IPR003441NAC domain
PfamPF023656.2E-745120IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MCPLAPAAPP PGLIGSCWSD DQIIFSLDQI NCGSPIPDDV IVDNPYQYDP SNLPDVDGAW  60
FLVSSNEKKE TKHGFWKAKG ESCEIFANSA IYGWRTTFEF VEAQAPIGQK TVWMMQEYKI  120
TQKEQHDHAM SKESALCRVF SCSDENLNNE RKPENLNKVN NETKPEHRND DLDTLLLSLM  180
PSITPHTSSN DGQRSIGEPQ ESALCRVFSC SDENLNNERK PENLNKVNNE TKPEHRNDDL  240
DTLLLSLMPS ITPHTSSNDG HRSIGEPQVK NQTEGIRPDH FDDDIIAELD CILREDYLEL  300
NDLVGVASHS SSSVNSSCHS LASDEYFDSM AFLRDLDDEK NQYLHGKGST SNYRIMMCRR  360
ANDVVMPPAP LESYISGSAA AAKDTQPGSS NKAKFPSKSS PEQDIKRLKA ECTNDEGPSH  420
SYRATAYFSS SSSSSSHEPV TTREEKRKKK LKKFLCFMPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758709.10.0PREDICTED: NAC domain-containing protein 19-like
RefseqXP_016452711.10.0PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A1S3YKE00.0A0A1S3YKE0_TOBAC; NAC domain-containing protein 19-like
TrEMBLA0A1U7V8W20.0A0A1U7V8W2_NICSY; NAC domain-containing protein 19-like
STRINGXP_009758709.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112072123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-13NAC domain containing protein 71