PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00447g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 415aa    MW: 44348 Da    PI: 6.9756
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00447g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.51.2e-22272334163
                               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               e+elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L+aeN++Lk+e+++l ++++klk e+
  Niben101Scf00447g03001.1 272 ERELKREKRKQSNRESARRSRLRKQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLEN 334
                               89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.8E-36192IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.8E-25133253No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-16266331No hitNo description
PfamPF001708.1E-21272334IPR004827Basic-leucine zipper domain
SMARTSM003381.4E-20272336IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76274337IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.19E-10275331No hitNo description
CDDcd147024.59E-20277325No hitNo description
PROSITE patternPS000360279294IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGNSEDGKPS KPEKSSSPTP DQSNLHVYPD WAAMQAYYGP RVAVPTYFNS AVAPGHAPHP  60
YMWGPQPMIP PYGAPYAAIY AHGGVYAHPG VPIGSHPPGH GMVTSPAVSQ PMDGASLSLD  120
ASAKSSENSD RGLLAMSLGN GSADNIEGGA DHGNSQSGDT EGSTDGSDTN GAGVSERSKK  180
RSRETTPDNS GDSKSHLRRC QPTGEVNDDS EKTIVAVRHG KVGAKVMGTV LSPSMTTTLD  240
MRNPASTHLK ASPTNVSQLS PALPNEAWLQ NERELKREKR KQSNRESARR SRLRKQAEAE  300
ELAIRVQSLT AENMTLKSEI NKLMENSEKL KLENAALMER LKNEQPGQTE EVSLGKIDDK  360
RLQPVGTANL LARVNNSGSL DRANNESEVY ENNSSGAKLH QLLNSSPRTD AVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288294RRSRLRK
2288295RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTrans-activator of a beta-glucuronidase (GUS) reporter gene. Binds to a G-box-related element, (5'-GCAACGTGGC-3'). Also binds to the HEX-motif of wheat histone H3 promoter.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501041.10.0PREDICTED: transcriptional activator TAF-1
SwissprotQ991420.0TAF1_TOBAC; Transcriptional activator TAF-1 (Fragment)
TrEMBLA0A1S4CJ710.0A0A1S4CJ71_TOBAC; transcriptional activator TAF-1
STRINGXP_009765847.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-88G-box binding factor 3
Publications ? help Back to Top
  1. Oeda K,Salinas J,Chua NH
    A tobacco bZip transcription activator (TAF-1) binds to a G-box-like motif conserved in plant genes.
    EMBO J., 1991. 10(7): p. 1793-802
    [PMID:2050116]