PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00199g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 279aa    MW: 31615.7 Da    PI: 6.574
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00199g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.83e-28959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k ien  nrqvtfskRr+g+lKKA+ELSvLCdaevaviifsst kl+e+ss
  Niben101Scf00199g02008.1  9 KLIENVNNRQVTFSKRRAGLLKKANELSVLCDAEVAVIIFSSTSKLFEFSS 59
                              569**********************************************96 PP
2K-box57.84.8e-2098188898
                     K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                               +l+++ +++ q+e++ Lk+e+++L+ +q +llG+dL+ L l+eL+ Le+qL+++l  i+++K+ ll++q+e+++++e+++ +e +
  Niben101Scf00199g02008.1  98 QLQTHVQKQEQKEVDSLKDELSKLKIKQLRLLGKDLNGLGLNELRLLEHQLNEGLLAIKDRKEALLIQQLENSRRQEERAVSESE 182
                               3566667889*************************************************************************** PP

                     K-box  93 aLrkkl 98 
                               +Lr++ 
  Niben101Scf00199g02008.1 183 TLRRQA 188
                               ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.385161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-32275IPR002100Transcription factor, MADS-box
CDDcd002651.14E-39278No hitNo description
PRINTSPR004049.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-14100187IPR002487Transcription factor, K-box
PROSITE profilePS5129711.418104194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRGKIDIKL IENVNNRQVT FSKRRAGLLK KANELSVLCD AEVAVIIFSS TSKLFEFSST  60
SMKQTLSRYQ RCVASTEISA IERKSEDNQQ PQPQPQTQLQ THVQKQEQKE VDSLKDELSK  120
LKIKQLRLLG KDLNGLGLNE LRLLEHQLNE GLLAIKDRKE ALLIQQLENS RRQEERAVSE  180
SETLRRQARQ AFVEELRGLF PLSASLPPPY LEYNPLEKKY PIIKEGEESL DSDTACEDGV  240
DDEDSNTTLQ LGLPTIGRKR KKPEQESPSS NSENQVGSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-22169169MEF2C
5f28_B5e-22169169MEF2C
5f28_C5e-22169169MEF2C
5f28_D5e-22169169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257261RKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787834.10.0PREDICTED: agamous-like MADS-box protein AGL15
RefseqXP_016490205.10.0PREDICTED: agamous-like MADS-box protein AGL15
TrEMBLA0A1S4BMX10.0A0A1S4BMX1_TOBAC; agamous-like MADS-box protein AGL15
TrEMBLA0A1U7XLK30.0A0A1U7XLK3_NICSY; agamous-like MADS-box protein AGL15
STRINGXP_009787834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.14e-52AGAMOUS-like 15