PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf00197g01018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 26345 Da PI: 9.8927 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.2 | 1.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgkl+e++s Niben101Scf00197g01018.1 9 KRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFIS 59 79***********************************************86 PP | |||||||
2 | K-box | 96.6 | 3.8e-32 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 yqk+ g++l+++++e++q++l+kLk+ ++nL+re+R+++Ge+L++L++++L++L +++++slk iR++K++++ +qie+ +kk + Niben101Scf00197g01018.1 71 YQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLRREIRQRMGESLNDLNYEQLEELNENVDNSLKLIRERKYKVISNQIETYKKKVR 155 899999******************************************************************************* PP K-box 86 elqeenkaLrkkle 99 +++e++++L +++ Niben101Scf00197g01018.1 156 NVEEIHRNLLLEFD 169 ********987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.071 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.15E-39 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 4.45E-36 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.4E-20 | 82 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.231 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMISS TGKLHEFISP 60 SVTTKQLFDL YQKTVGVDLW NSHYEKMQEQ LRKLKDVNRN LRREIRQRMG ESLNDLNYEQ 120 LEELNENVDN SLKLIRERKY KVISNQIETY KKKVRNVEEI HRNLLLEFDA RQEEPYGLVE 180 QEGDYNSVLG FPNGGPRILA LRLQPNHQPH HLHSGGGSDI TTFALA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-15 | 1 | 62 | 1 | 62 | MEF2C |
5f28_B | 4e-15 | 1 | 62 | 1 | 62 | MEF2C |
5f28_C | 4e-15 | 1 | 62 | 1 | 62 | MEF2C |
5f28_D | 4e-15 | 1 | 62 | 1 | 62 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312649.1 | 1e-163 | floral homeotic protein PMADS 1 | ||||
Refseq | XP_009794650.1 | 1e-163 | PREDICTED: floral homeotic protein PMADS 1 | ||||
Swissprot | Q07472 | 1e-142 | MADS1_PETHY; Floral homeotic protein PMADS 1 | ||||
TrEMBL | A0A1U7Y758 | 1e-162 | A0A1U7Y758_NICSY; floral homeotic protein PMADS 1 | ||||
TrEMBL | Q40513 | 1e-162 | Q40513_TOBAC; MADS-box protein | ||||
STRING | XP_009794650.1 | 1e-163 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2314 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-89 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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