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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_867_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 281aa MW: 32835.8 Da PI: 4.3046 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.9 | 4.6e-22 | 36 | 84 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie +s r+v fskRr+g++KKAeEL+ LCdae+ +i+fs++g++y + Neem_867_f_4 36 KKIEKNSSRKVAFSKRRKGMFKKAEELCWLCDAEIGIIVFSPKGRVYCF 84 689*******************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.553 | 28 | 88 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-29 | 28 | 87 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-26 | 29 | 108 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 30 | 50 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-22 | 37 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 50 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-19 | 65 | 86 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MEKPFRSLPT SWNDMEQQQQ AKKKPKGTGR KKIEIKKIEK NSSRKVAFSK RRKGMFKKAE 60 ELCWLCDAEI GIIVFSPKGR VYCFGYPSLN YVIDKFLNEN YDELKDYSDD SDSNDCVTEE 120 EEDDGEEEEG FWWEESIEDL NMEQLQIYKT YLEQLRCNVA TKIEEMVMRR TRERDFFGVM 180 VTEISIVSVQ SMEAVTSPRD HGEVGAYPYS WFRCSPSAIL FLTVLSTVFI SGDEDNNPWK 240 EAKEESMGPE AEEEKDDSLA TGEEGFWWKV PVECLSMEEY W |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006468188.1 | 4e-63 | agamous-like MADS-box protein AGL28 | ||||
TrEMBL | A0A2H5N5J1 | 2e-61 | A0A2H5N5J1_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TR25 | 2e-61 | V4TR25_9ROSI; Uncharacterized protein | ||||
STRING | XP_006468188.1 | 1e-62 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-20 | AGAMOUS-like 61 |