PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_8196_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 336aa    MW: 37372.4 Da    PI: 9.201
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_8196_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.1e-101461831954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Neem_8196_f_2 146 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 183
                    664459******************************87 PP
2BELL81.79.4e-278701072
           BELL 10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                   +k ++ +  V+krYk y++q+q+v+ssFe vagl +a+pY+slA k+iS++FrcL+  i++q+
  Neem_8196_f_2  8 TKAVDYVPTVCKRYKLYQQQMQMVVSSFESVAGLSAATPYVSLAFKTISKNFRCLRSTIINQL 70
                   677777889***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0033168IPR006563POX domain
PfamPF075263.1E-211666IPR006563POX domain
PROSITE profilePS5007111.855124187IPR001356Homeobox domain
CDDcd000862.28E-11127188No hitNo description
SMARTSM003891.8E-8127191IPR001356Homeobox domain
SuperFamilySSF466892.27E-17129194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28130191IPR009057Homeodomain-like
PfamPF059201.2E-18144183IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSLSCIITKA VDYVPTVCKR YKLYQQQMQM VVSSFESVAG LSAATPYVSL AFKTISKNFR  60
CLRSTIINQL KHVTKALGEE LLSSATGASS SKGDTNTSKL KCMDQILQKH KSCGGNVGFL  120
EPQQHVWRPQ RGLPERAVAI LRAWLFEHFL HPYPTDTDKH MLATQTGLSR NQVSNWFINA  180
RVRVWKPMVE EIHMLETQGL AQSNQNLNKN DRTSASEGTA GSFNSDQPMN KLAISAMSDE  240
QLDYSGIGSS RGNEEGITAE GCSQEKRSRV ESQFTTSMDR SLMGFMPYQR RGIEVGALGP  300
VSLTLGLRHG VESSQQRQED QLRRQFGGQI IPDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16133191563Homeobox protein Meis2
3k2a_B3e-16133191563Homeobox protein Meis2
4xrs_A2e-16133190158Homeobox protein Meis1
4xrs_B2e-16133190158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488058.11e-179BEL1-like homeodomain protein 9
RefseqXP_024957472.11e-179BEL1-like homeodomain protein 9
TrEMBLA0A067EYN51e-177A0A067EYN5_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q5421e-177A0A2H5Q542_CITUN; Uncharacterized protein
STRINGXP_006488058.11e-178(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-75BEL1-like homeodomain 8