PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7983_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 1192aa MW: 133477 Da PI: 8.9608

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7983_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.5e-09	70	105	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a + +R+ +++ Neem_7983_f_1 70 QWSKEELERFYEAYRKYGKD-WKKVAVAVC-NRSVEMV 105 6***************99.******9.9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.536	66	119	IPR017884	SANT domain
SMART	SM00717	9.5E-5	67	115	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.47E-9	67	113	IPR009057	Homeodomain-like
Pfam	PF00249	8.5E-8	70	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-4	70	103	IPR009057	Homeodomain-like
CDD	cd00167	2.73E-6	71	105	No hit	No description
SMART	SM01135	2.9E-53	654	755	IPR033471	DIRP domain
Pfam	PF06584	2.7E-30	654	754	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1192 aa Download sequence Send to blast
MTYAHCVCPH FFMVKGFRQL RKIHMAPSRK AKSGNKRVSY TNEVPSKKKG QNVDRSGQRK 60 RKLSDMLGPQ WSKEELERFY EAYRKYGKDW KKVAVAVCNR SVEMVEALFT MNRAYLSLPE 120 GTASVVGLIA MMTDHYGILA GSGSEQESDD GTDSSPKSQK HVGGKSRNPP RKGSDEPFPD 180 LLHFQSAASN YGCLSLLKKR RSGGSRPRAV AKRTPRVPVS YSYDKDNIEK YLSPIKQGLK 240 PKMGGINDDV AHEIALALTE ASQRGGSPQV SQTPKRKRGT LSPVQKGVRM CDESEMSGFK 300 VRGSEMDEDG CELSLGSTDG DNEYYSRDKS YFMDTETAGT VEAHQKGKKR RSKKPKREES 360 ENNHLDDIKE ACSGTEEGQN MVVVNGKFGM EIADEKIPRF YSKGSRKRSK KVLFKRDESS 420 AFDALQTLAD LSLMMPETTA DTKSSLQLKE EKPGTFAESK LKGSYLIRGV KDADTGTSKL 480 GKDCADAVGV MPEAEEGNHQ TNAGSRTKRQ KFLPFKLRMD AADELKKFVS RGKRTLSAAQ 540 SKQGKLVKPT EGASSTDHGK EGNSSGLSTT HIRSANQVNL PTKVRSRRKM NARKLFIERD 600 KKSSEDILKS SDDILDGQNG TNSSYHEIAL KLKEQLSNCL SWYQVQRWCI FEWFYSAIDY 660 PWFAKREFVE YLDHVGLSHV PRLTRVEWGV IKSSLGRPRR FSEQFLKEEK EKLYQYRESV 720 RTHYSELHAG TREGLPTDLA RPLFVGQRIV SVHPRTREIH DGSVLTVDHS RYRVQFDQHE 780 LGVEFVRDID CMPLNLLENM PASLTRQNVA FGKFIENFTE LKMNGQPRER NIEGYMKFSP 840 CENLEKAYAT CHTFPSTNYH VNNLLQQQKG VSSSPNSQVK VGLSETVSVQ QAASEPSIIA 900 QIQAKEADVQ ALSELTRVLD QKEAIVSELR HMNNEVLEDQ KDGGNLFKDS ERFRKHYAAI 960 LLQLNEVASA LFCLRQRNTY QGNMLLPWSK TMAGLGDLGG LSSSFDHSAY QSQESGPHVA 1020 EIIESSRTKA QKMVDVVVQA LSSLKRENGI ERIEEVMDFV NNRLSGDDLG MPSNRSSTPE 1080 DMVLGARTSE DQLRTITTNT LSNSCAPDST LNNSSDENTP QIPSELIAHC VATLLTIQKC 1140 TEREFPPADV AQVLDSAVMS LQPCCSQNLP IYAEIQKCMG IIKNQILALV PT

Sequence ? help Back to Top

Protein Sequence Length: 1192 aa Download sequence Send to blast

MTYAHCVCPH FFMVKGFRQL RKIHMAPSRK AKSGNKRVSY TNEVPSKKKG QNVDRSGQRK  60
RKLSDMLGPQ WSKEELERFY EAYRKYGKDW KKVAVAVCNR SVEMVEALFT MNRAYLSLPE  120
GTASVVGLIA MMTDHYGILA GSGSEQESDD GTDSSPKSQK HVGGKSRNPP RKGSDEPFPD  180
LLHFQSAASN YGCLSLLKKR RSGGSRPRAV AKRTPRVPVS YSYDKDNIEK YLSPIKQGLK  240
PKMGGINDDV AHEIALALTE ASQRGGSPQV SQTPKRKRGT LSPVQKGVRM CDESEMSGFK  300
VRGSEMDEDG CELSLGSTDG DNEYYSRDKS YFMDTETAGT VEAHQKGKKR RSKKPKREES  360
ENNHLDDIKE ACSGTEEGQN MVVVNGKFGM EIADEKIPRF YSKGSRKRSK KVLFKRDESS  420
AFDALQTLAD LSLMMPETTA DTKSSLQLKE EKPGTFAESK LKGSYLIRGV KDADTGTSKL  480
GKDCADAVGV MPEAEEGNHQ TNAGSRTKRQ KFLPFKLRMD AADELKKFVS RGKRTLSAAQ  540
SKQGKLVKPT EGASSTDHGK EGNSSGLSTT HIRSANQVNL PTKVRSRRKM NARKLFIERD  600
KKSSEDILKS SDDILDGQNG TNSSYHEIAL KLKEQLSNCL SWYQVQRWCI FEWFYSAIDY  660
PWFAKREFVE YLDHVGLSHV PRLTRVEWGV IKSSLGRPRR FSEQFLKEEK EKLYQYRESV  720
RTHYSELHAG TREGLPTDLA RPLFVGQRIV SVHPRTREIH DGSVLTVDHS RYRVQFDQHE  780
LGVEFVRDID CMPLNLLENM PASLTRQNVA FGKFIENFTE LKMNGQPRER NIEGYMKFSP  840
CENLEKAYAT CHTFPSTNYH VNNLLQQQKG VSSSPNSQVK VGLSETVSVQ QAASEPSIIA  900
QIQAKEADVQ ALSELTRVLD QKEAIVSELR HMNNEVLEDQ KDGGNLFKDS ERFRKHYAAI  960
LLQLNEVASA LFCLRQRNTY QGNMLLPWSK TMAGLGDLGG LSSSFDHSAY QSQESGPHVA  1020
EIIESSRTKA QKMVDVVVQA LSSLKRENGI ERIEEVMDFV NNRLSGDDLG MPSNRSSTPE  1080
DMVLGARTSE DQLRTITTNT LSNSCAPDST LNNSSDENTP QIPSELIAHC VATLLTIQKC  1140
TEREFPPADV AQVLDSAVMS LQPCCSQNLP IYAEIQKCMG IIKNQILALV PT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	61	KKKGQNVDRSGQRKRK
2	347	352	KKRRSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006489119.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_024958479.1	0.0	protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A067G6D7	0.0	A0A067G6D7_CITSI; Uncharacterized protein
STRING	XP_006489119.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]