PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6774_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 978aa MW: 107126 Da PI: 5.5913

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6774_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.7	8.3e-27	560	620	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg..........vclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lg vc+T++KriCRq+GI+RWP+Rki+++ Neem_6774_f_3 560 EKSISLEVLQQYFAGSLKDAAKSLGdgsdkdscitVCPTTMKRICRQHGISRWPSRKINKV 620 799********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.664	549	640	IPR003035	RWP-RK domain
Pfam	PF02042	6.2E-24	563	620	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-23	875	968	No hit	No description
SMART	SM00666	1.1E-25	882	964	IPR000270	PB1 domain
PROSITE profile	PS51745	26.192	882	964	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.5E-26	883	963	No hit	No description
Pfam	PF00564	3.7E-18	883	963	IPR000270	PB1 domain
CDD	cd06407	1.31E-31	883	963	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence Send to blast
MDLDVDLDLD NPWPLDQIGF VSNPMSPCLI SSSEQPSSPL WAFSDADNDD KIPGHVNYPL 60 FLKCNPTSET ENTKDNDKNR RFPSPLSGLI PLDSSDGYCM IKERMTQALR YFKDSTDQHV 120 LAQVWVPVKI GGRYVLTTSG QPFVLDPHSN GLHQYRMVSL MYMFSVDGEN DSELGLPGRV 180 FWQKLPEWTP NVQYYSSKEF SRLDHALNHN VRGTIALPVF EPSGQSCVGV IELIMTSQKI 240 NYAPEVDKVC KALEAVNLKS SEILDHPSTQ ICNGGRQNAL AEILEILSVV CETHKLPLAQ 300 TWVPCRHRSV LAYGGGFKKS CSSIDGSCMG KVCMSTTDVA FYVVDPHMWG FREACVEHHL 360 QKGQGVAGRS FFSLSSCFCK DITQFCKTEY PLVHYARMFG LTSCFAICLR SSHTGDDDYV 420 LEFFLPPVIV DSFEQQNLLG SMLATMKQHF QSLKVASGIE LEDDEVSIEI IEAFADKKIS 480 LRVGTIGIPQ SVQSPSEHNA LLNGQELLPL DLPEHQLMVN FEARNDGGNV VNVSGSNNPV 540 SFPENKNTRK SSERKRGKTE KSISLEVLQQ YFAGSLKDAA KSLGDGSDKD SCITVCPTTM 600 KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGADGT FGLTSLAASP LPVAVGSISW 660 PPVLNGSNQQ HSPSSKPSEP LGEKNGSPTY KTLGSDGHAG LDDRLSGGRM SDHKELIHEQ 720 NGLSPEIGKG TNSSKTGSGS REESAGSPTS HGSCQGSPAN ESTPAKDPLV TSIHEPCFKV 780 GGFPELVFQP TGELNLSAAF SIPDALVSTE PQEPFGGMLL EDAGSSKDLR NLCPAAADAI 840 ADERLPETSC TNPPCADVSP KQRLASLTQT MPHVHTRQEM KSMTIKATYR EDIIRFRISL 900 NSGIVELKEE VAKRLKLELG TFDIKYLDDD HEWVLIACDA DLQECLDISR SSGSSIIRLS 960 IHDIMPNLGS SCESTGEL

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence Send to blast

MDLDVDLDLD NPWPLDQIGF VSNPMSPCLI SSSEQPSSPL WAFSDADNDD KIPGHVNYPL  60
FLKCNPTSET ENTKDNDKNR RFPSPLSGLI PLDSSDGYCM IKERMTQALR YFKDSTDQHV  120
LAQVWVPVKI GGRYVLTTSG QPFVLDPHSN GLHQYRMVSL MYMFSVDGEN DSELGLPGRV  180
FWQKLPEWTP NVQYYSSKEF SRLDHALNHN VRGTIALPVF EPSGQSCVGV IELIMTSQKI  240
NYAPEVDKVC KALEAVNLKS SEILDHPSTQ ICNGGRQNAL AEILEILSVV CETHKLPLAQ  300
TWVPCRHRSV LAYGGGFKKS CSSIDGSCMG KVCMSTTDVA FYVVDPHMWG FREACVEHHL  360
QKGQGVAGRS FFSLSSCFCK DITQFCKTEY PLVHYARMFG LTSCFAICLR SSHTGDDDYV  420
LEFFLPPVIV DSFEQQNLLG SMLATMKQHF QSLKVASGIE LEDDEVSIEI IEAFADKKIS  480
LRVGTIGIPQ SVQSPSEHNA LLNGQELLPL DLPEHQLMVN FEARNDGGNV VNVSGSNNPV  540
SFPENKNTRK SSERKRGKTE KSISLEVLQQ YFAGSLKDAA KSLGDGSDKD SCITVCPTTM  600
KRICRQHGIS RWPSRKINKV NRSLSKLKRV IESVQGADGT FGLTSLAASP LPVAVGSISW  660
PPVLNGSNQQ HSPSSKPSEP LGEKNGSPTY KTLGSDGHAG LDDRLSGGRM SDHKELIHEQ  720
NGLSPEIGKG TNSSKTGSGS REESAGSPTS HGSCQGSPAN ESTPAKDPLV TSIHEPCFKV  780
GGFPELVFQP TGELNLSAAF SIPDALVSTE PQEPFGGMLL EDAGSSKDLR NLCPAAADAI  840
ADERLPETSC TNPPCADVSP KQRLASLTQT MPHVHTRQEM KSMTIKATYR EDIIRFRISL  900
NSGIVELKEE VAKRLKLELG TFDIKYLDDD HEWVLIACDA DLQECLDISR SSGSSIIRLS  960
IHDIMPNLGS SCESTGEL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439290.2	0.0	LOW QUALITY PROTEIN: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A173G8J1	0.0	A0A173G8J1_PONTR; Transcription factor NLP7
STRING	XP_006476342.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]