PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6716_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 281aa MW: 32574.6 Da PI: 7.5787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6716_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151	5.6e-47	8	134	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 pGfrFhPt++el+++yLk+ v gkkl++ ++i ++iy+++Pw+Lp k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s Neem_6716_f_1 8 PGFRFHPTEDELLNFYLKNMVFGKKLHF-DIIGFLNIYHHDPWELPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTEHGFWKATGSDRKIWSLsdP 102 9***********************99.99***********8778899*********************************987667 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +gl+ktLvfy+grapkg+ktdWvm+eyrl Neem_6716_f_1 103 KRMIGLRKTLVFYEGRAPKGQKTDWVMNEYRL 134 778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.247	6	152	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-55	7	152	IPR003441	NAC domain
Pfam	PF02365	6.2E-25	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MTPELDLPGF RFHPTEDELL NFYLKNMVFG KKLHFDIIGF LNIYHHDPWE LPGLSKIGER 60 EWYFFVPRDR KHGSGGRPNR TTEHGFWKAT GSDRKIWSLS DPKRMIGLRK TLVFYEGRAP 120 KGQKTDWVMN EYRLPDGCPL PKDIVLCKIY RKATSLKVLE QRAAMEEEMK TIFRSPSPPS 180 PPLDTVSFCG QPEEFITPMS VPHVMLKQEE QEVLMVEEIT EEKAQQKKCS TTTLQMPLGK 240 ANLPELQVPK MDWSQDPLWS QLSPWLQNLT QNLTPYAGIL N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-44	8	155	22	171	NAC domain-containing protein 19
3swm_B	2e-44	8	155	22	171	NAC domain-containing protein 19
3swm_C	2e-44	8	155	22	171	NAC domain-containing protein 19
3swm_D	2e-44	8	155	22	171	NAC domain-containing protein 19
3swp_A	2e-44	8	155	22	171	NAC domain-containing protein 19
3swp_B	2e-44	8	155	22	171	NAC domain-containing protein 19
3swp_C	2e-44	8	155	22	171	NAC domain-containing protein 19
3swp_D	2e-44	8	155	22	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422477.1	1e-169	NAC domain-containing protein 22
Refseq	XP_006486646.1	1e-169	NAC domain-containing protein 22
Swissprot	Q10S65	2e-97	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A067FXU8	1e-167	A0A067FXU8_CITSI; Uncharacterized protein
TrEMBL	V4S5S1	1e-167	V4S5S1_9ROSI; Uncharacterized protein
STRING	XP_006486646.1	1e-168	(Citrus sinensis)
STRING	XP_006422477.1	1e-168	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-121	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]