PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4815_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 347aa    MW: 38581.2 Da    PI: 8.7875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4815_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.13.9e-54151421128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ 
  Neem_4815_f_1  15 LPPGFRFHPTDEELVVHYLKKKTTSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISSe 109
                    79****************************.88***************988899**************************************9986 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Neem_4815_f_1 110 SNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142
                    7788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-657176IPR003441NAC domain
PROSITE profilePS5100562.06915176IPR003441NAC domain
PfamPF023653.5E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MESTDSSTGS PQPNLPPGFR FHPTDEELVV HYLKKKTTSA PLPVAIIAEV DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVISSES NQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLADNKVSNK PPGYDLGNKK NSLRLDDWVL CRIYKKNNTH  180
RPMDHDKEDA LDDMLGHIPS SLMVSSQQNT KLNLPTRSAN YGALIDNETN LFEGLISHDG  240
INNGSISSQL ASSRLQLPTD SLKRTLPSIN WTDVDAASGA SLSKRFHGES NDDQSIGRTD  300
GNGSIAILLS HLPQTPPPLH QQTMLGSSGD GLFRQPYHQF PGMNWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-7311796168NO APICAL MERISTEM PROTEIN
1ut4_B2e-7311796168NO APICAL MERISTEM PROTEIN
1ut7_A2e-7311796168NO APICAL MERISTEM PROTEIN
1ut7_B2e-7311796168NO APICAL MERISTEM PROTEIN
3swm_A3e-7311799171NAC domain-containing protein 19
3swm_B3e-7311799171NAC domain-containing protein 19
3swm_C3e-7311799171NAC domain-containing protein 19
3swm_D3e-7311799171NAC domain-containing protein 19
3swp_A3e-7311799171NAC domain-containing protein 19
3swp_B3e-7311799171NAC domain-containing protein 19
3swp_C3e-7311799171NAC domain-containing protein 19
3swp_D3e-7311799171NAC domain-containing protein 19
4dul_A2e-7311796168NAC domain-containing protein 19
4dul_B2e-7311796168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264DSLKRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021327.10.0PREDICTED: NAC transcription factor 56
SwissprotQ9LD441e-126NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A061F8180.0A0A061F818_THECC; NAC domain protein, IPR003441
STRINGEOY128520.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-123NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]