PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_4533_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 127aa MW: 14145.5 Da PI: 8.6448 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.2 | 5.9e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ Neem_4533_f_3 10 RIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.637 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.29E-28 | 2 | 63 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.42E-39 | 2 | 61 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGRGRVQLRR IENKISRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTD 60 SRSVPVLYFE LETLFNQQSL LCMLLGAWFL TKDPGALCCW GLLYFTLLGE EDNLPNVSSA 120 SGGLQPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-20 | 1 | 70 | 1 | 71 | MEF2C |
5f28_B | 7e-20 | 1 | 70 | 1 | 71 | MEF2C |
5f28_C | 7e-20 | 1 | 70 | 1 | 71 | MEF2C |
5f28_D | 7e-20 | 1 | 70 | 1 | 71 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430951.1 | 2e-35 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_006482432.1 | 2e-35 | truncated transcription factor CAULIFLOWER A | ||||
Refseq | XP_008230294.1 | 5e-35 | PREDICTED: truncated transcription factor CAULIFLOWER A | ||||
Swissprot | D7SMN6 | 3e-35 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A2H5P1P7 | 5e-34 | A0A2H5P1P7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4T3U9 | 5e-34 | V4T3U9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006482431.1 | 8e-35 | (Citrus sinensis) | ||||
STRING | POPTR_0012s05950.1 | 5e-35 | (Populus trichocarpa) | ||||
STRING | POPTR_0017s13400.1 | 7e-35 | (Populus trichocarpa) | ||||
STRING | XP_006430951.1 | 8e-35 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-35 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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