PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3528_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 1196aa MW: 133501 Da PI: 9.6361

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3528_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.1e-08	57	93	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E +++++a + +G++ Wk++a+ + +R+++++ Neem_3528_f_4 57 QWSKGELQRFYEAYRNYGKD-WKKVAAQVR-NRSAEMVE 93 6***************99.*****.**9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.012	53	106	IPR017884	SANT domain
SMART	SM00717	0.0025	54	102	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.37E-9	54	101	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-5	57	97	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-7	57	97	IPR001005	SANT/Myb domain
CDD	cd00167	2.78E-4	58	92	No hit	No description
Pfam	PF06584	3.2E-30	668	770	IPR033471	DIRP domain
SMART	SM01135	8.3E-53	668	771	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1196 aa Download sequence Send to blast
MAPTRKSRSV NKRYSNEVSP GKDMVNSSKA KQKLCFNMLT MKFSSLKKKL SDKLGPQWSK 60 GELQRFYEAY RNYGKDWKKV AAQVRNRSAE MVEALYNMNR AYLSLPEGTA SVVGLIAMMT 120 DHYNVLEGSD SERESNDASG IARKSQKRKR AKVQLSASKE DISQPWTMAS NGGCLSLLKR 180 ARTDGTQPRA VKKRTPRFPV SYSHKKDDRD DYIPLNKKER RSDADANDDE VAHVAALALT 240 QASQRGGSPQ VSQRPYKRTE HGKSSPVQSW DKMFSQSERA HSDLRDASLC EEDCSESRIR 300 SMRPENGTYT GDAKSLMDVE GVGTVEVHRK GKKFYRKKTK VEEVRNSLSD DEGEACSGTE 360 EGMSGHKGKV DIEISDAKIE QLPPRVQRKR SKKLFFGDEN SALDALQTLA DLSLMLPDST 420 MESESSVQLK EEQTAFDMDD KSSAPEATST SHPKDKIKHL GPKEKALNTI TEVEGTMPKK 480 SKLGRYSGVD VETVAEVKEQ PELPHSTWKR KRKPILSKKI SNAEALTESH PTSTLECEAF 540 AGEENKLPSK GKRTSQISAQ LKQWKPGRLL EGSSVNDQKR ARIDSVASTA QVPAASPASK 600 PTNLRSRRKV VLKRKLCSKE VKSSENILKA QRNKYFISQQ DRLLSVKDKL SCCLSSDMVR 660 RWCTFEWFYS AIDYPWFANR EFVEYLNHVG LGHIPRLTRV EWGVIRRHVS LGKPRRLSER 720 FLRDEREKLK LYRESVRKHY AELRTGIREG LPRDLPRPLS VGQRVIAIHP KTRELHDGSV 780 LTVDHDKCRV QFDRPELGVE FVTIVLGAVA IQKILIQFTK STLLLDELVW DIDCMPSNPL 840 DNMPEALRRQ ISADKFPVIP KELQVNGHSN FGASMLFASG GHLEKALIST NTFTKQGDTN 900 YALLSKSVAP EQVAYGQTCT AAQVQAREAT IRALSEVKRA LSKKEALLME LKNTNNDILE 960 SQNGGEGCLK DSEPLKKHIA TASSALLHVR QRNTYPESSL PPWSKPTANC RTIDNSCVSQ 1020 ESGSAVLEIV SGSRLKAHTM VDAAIKAMSS VKEGEDAFMK IGEALDHIDK QQLTSDPRVP 1080 VMRSPEQVNG SHHNQFVSGT ADPLLNGCAT GPKLEAGSDK HEAQIPSELI TSCVATLLMI 1140 QTCTERHCPA DVAQIIDSAV SSLRPCCPQN LPIYREIEMC MGRIKTQILA LIPTSI

Sequence ? help Back to Top

Protein Sequence Length: 1196 aa Download sequence Send to blast

MAPTRKSRSV NKRYSNEVSP GKDMVNSSKA KQKLCFNMLT MKFSSLKKKL SDKLGPQWSK  60
GELQRFYEAY RNYGKDWKKV AAQVRNRSAE MVEALYNMNR AYLSLPEGTA SVVGLIAMMT  120
DHYNVLEGSD SERESNDASG IARKSQKRKR AKVQLSASKE DISQPWTMAS NGGCLSLLKR  180
ARTDGTQPRA VKKRTPRFPV SYSHKKDDRD DYIPLNKKER RSDADANDDE VAHVAALALT  240
QASQRGGSPQ VSQRPYKRTE HGKSSPVQSW DKMFSQSERA HSDLRDASLC EEDCSESRIR  300
SMRPENGTYT GDAKSLMDVE GVGTVEVHRK GKKFYRKKTK VEEVRNSLSD DEGEACSGTE  360
EGMSGHKGKV DIEISDAKIE QLPPRVQRKR SKKLFFGDEN SALDALQTLA DLSLMLPDST  420
MESESSVQLK EEQTAFDMDD KSSAPEATST SHPKDKIKHL GPKEKALNTI TEVEGTMPKK  480
SKLGRYSGVD VETVAEVKEQ PELPHSTWKR KRKPILSKKI SNAEALTESH PTSTLECEAF  540
AGEENKLPSK GKRTSQISAQ LKQWKPGRLL EGSSVNDQKR ARIDSVASTA QVPAASPASK  600
PTNLRSRRKV VLKRKLCSKE VKSSENILKA QRNKYFISQQ DRLLSVKDKL SCCLSSDMVR  660
RWCTFEWFYS AIDYPWFANR EFVEYLNHVG LGHIPRLTRV EWGVIRRHVS LGKPRRLSER  720
FLRDEREKLK LYRESVRKHY AELRTGIREG LPRDLPRPLS VGQRVIAIHP KTRELHDGSV  780
LTVDHDKCRV QFDRPELGVE FVTIVLGAVA IQKILIQFTK STLLLDELVW DIDCMPSNPL  840
DNMPEALRRQ ISADKFPVIP KELQVNGHSN FGASMLFASG GHLEKALIST NTFTKQGDTN  900
YALLSKSVAP EQVAYGQTCT AAQVQAREAT IRALSEVKRA LSKKEALLME LKNTNNDILE  960
SQNGGEGCLK DSEPLKKHIA TASSALLHVR QRNTYPESSL PPWSKPTANC RTIDNSCVSQ  1020
ESGSAVLEIV SGSRLKAHTM VDAAIKAMSS VKEGEDAFMK IGEALDHIDK QQLTSDPRVP  1080
VMRSPEQVNG SHHNQFVSGT ADPLLNGCAT GPKLEAGSDK HEAQIPSELI TSCVATLLMI  1140
QTCTERHCPA DVAQIIDSAV SSLRPCCPQN LPIYREIEMC MGRIKTQILA LIPTSI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006433343.1	0.0	protein ALWAYS EARLY 2 isoform X3
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	V4SFZ4	0.0	V4SFZ4_9ROSI; Uncharacterized protein
STRING	XP_006433342.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]