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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_2493_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 25953.3 Da PI: 9.5215 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.5 | 1.5e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ Neem_2493_f_1 15 LPPGFRFHPTDEELVVHYLKKKTTSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVISSe 109 79****************************.88***************988899**************************************9986 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Neem_2493_f_1 110 SNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142 7788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-66 | 7 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.069 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MESTDSSTGS PQPNLPPGFR FHPTDEELVV HYLKKKTTSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVISSES NQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RLADNKVSNK PPGYDLGNKK NSLRLDDWVL CRIYKKNNTH 180 RPMDHDKEDA LDDMLGHIPS SLMVSSQQNT KLNLPTRSAN YGALIDNETN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-75 | 1 | 179 | 9 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021606877.1 | 1e-147 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-111 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A0M5JAD3 | 1e-146 | A0A0M5JAD3_MANES; NAC transcription factors 48 | ||||
STRING | cassava4.1_022751m | 1e-147 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-113 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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