PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_22869_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22139.3 Da PI: 10.3434 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.8 | 1.6e-19 | 17 | 57 | 11 | 51 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 t++kRr g+lKKA+ELSvLCd++v +++fs++ kl ++s Neem_22869_f_1 17 LTYTKRRDGLLKKANELSVLCDTDVGLVMFSPSSKLTKFCS 57 7*************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.7E-21 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.418 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-26 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.43E-23 | 2 | 58 | No hit | No description |
Pfam | PF00319 | 2.8E-17 | 17 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-13 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-13 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGRKKLEMKK IEDLSALTYT KRRDGLLKKA NELSVLCDTD VGLVMFSPSS KLTKFCSSGR 60 KEALEKKLIQ LTKQQLRAKE KLSFYQPKVE NITSIHEAHI HEQNISGAIQ HIEKLKDKML 120 GKDSAPRISQ GVEQQAAVSI RDTNFTTDAS ASSKRKRNQV RDANHQAETT STAGLNPSIQ 180 FLDQLRHWIL ESGGHVN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447462.2 | 3e-56 | agamous-like MADS-box protein AGL66 | ||||
Refseq | XP_006469733.1 | 3e-56 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A2H5QJ18 | 2e-63 | A0A2H5QJ18_CITUN; Uncharacterized protein | ||||
STRING | XP_006469733.1 | 1e-55 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 1e-20 | AGAMOUS-like 104 |