PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Neem_22401_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 306aa MW: 34783.5 Da PI: 8.3204

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_22401_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.4e-05	229	251	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Neem_22401_f_1 229 FMCRKCGKAFAVRGDWRTHEKNC 251 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.34E-6	211	249	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.9E-6	225	249	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	229	249	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MDVDKSKGKE ESLFLTSANN EDETVTVALH IGLPSPSAAE MASVLSSSSE ITDKDGDGDD 60 SGYPINRLNK GQYWIPTPSQ ILIGPTQFSC PVCCKTFNRY NNMQFNYTDM KTPIRRMSSA 120 LDHRSPESRD FACIFFSVFL SYSFLDLEVP KKPRNCFLKF KMHMWGHGSQ YRKGPESLRG 180 TQPTGMLRLP CYCCAPGCRN NIDHPRAKPL KDFRTLQTHY KRKHGIKPFM CRKCGKAFAV 240 RGDWRTHEKN CGKLWYCICG SDFKHKRSLK DHIKAFGNGH AAYGIDGFEE EDEPASEVEQ 300 DNESMQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM485732	1e-135	AM485732.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X068454.12, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022888258.1	1e-134	zinc finger protein WIP2-like
Refseq	XP_022888259.1	1e-134	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-124	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A438JL38	1e-167	A0A438JL38_VITVI; Zinc finger protein WIP2
STRING	VIT_08s0007g08070.t01	1e-133	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-126	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]