PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_21932_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 26365.9 Da PI: 4.5098 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 14 | 43 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIar 29 +g+W++eEd +l+d+++++G+g +W + ++ Neem_21932_f_1 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPQ 43 79********************99977666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 5 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-6 | 8 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.073 | 9 | 56 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.3E-6 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.32E-5 | 16 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPQKADCTSY YTPAKSFSSF 60 DSFEPISSNI PLHLLNNNTC VATSSSQFQI QENQLVSSMQ YYPLKENFLT FGSEPSCSSS 120 DGSCSQISYG REVKQEDMVF QGYYSNGFEE NHKFMLSYGN SNSNCHGGEN LNQWTEKPNG 180 YFGETPSSDY TLEDVKQLIS CSSINGCNND NINLFSVADE NKIQEKIMYH YFNY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM449314 | 2e-39 | AM449314.2 Vitis vinifera contig VV78X266403.66, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022756573.1 | 8e-50 | transcription factor RAX2-like | ||||
TrEMBL | A0A067FAN8 | 2e-46 | A0A067FAN8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QQQ7 | 2e-46 | A0A2H5QQQ7_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UEI6 | 2e-46 | V4UEI6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006488026.1 | 4e-47 | (Citrus sinensis) | ||||
STRING | XP_006424474.1 | 4e-47 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17577 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 7e-26 | myb domain protein 36 |