PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2052_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 627aa    MW: 70114.8 Da    PI: 6.9097
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2052_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-11306359254
            AP2   2 gykGV....rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                     y+GV    ++++  ++W A++        +  k ++lg+f+++eeAaka++ a+ + +
  Neem_2052_f_1 306 IYRGVsrhvSRNPAYNKWQARLGKS-----KdtKGIYLGTFDSEEEAAKAYDVAAIRVK 359
                    57787666688999999****6663.....235*********************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-8192271IPR001471AP2/ERF domain
PROSITE profilePS5103213.34192270IPR001471AP2/ERF domain
SMARTSM003801.3E-5192276IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-8216272IPR016177DNA-binding domain
SuperFamilySSF541714.9E-14305369IPR016177DNA-binding domain
CDDcd000182.05E-17305369No hitNo description
PROSITE profilePS5103216.911306368IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-14306368IPR001471AP2/ERF domain
SMARTSM003801.5E-17306374IPR001471AP2/ERF domain
PfamPF008472.0E-7306360IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MEVKKKSDEK FSAPKSTLSS AATSPANHAS QSQSSNLGFS ISHTDHDQNQ NQLVPHCSPE  60
AHEGIINSTI NFSELHQVFL SGNSLQHETT PQKSQGSLQV QYYSSPETTA YSILPIQSVE  120
QRDSTVNGEI SGEIKSSMIT VKEKNREPST KRKHPEETSL NVVNGEINNG GNGKDTGQPL  180
GHEQIFWERT SKYRGVSRSS EVHKFELSIA KKSFLHWRGN IERYETFLWD NSDPQAKPKT  240
GGFANEETAA RAYDLAALKL WGVSAQINFP LSEYEKDLEE MKNMTKKEYL LTLRRKSKGF  300
SKGVSIYRGV SRHVSRNPAY NKWQARLGKS KDTKGIYLGT FDSEEEAAKA YDVAAIRVKG  360
LEAITNFNIR EYDVKSILQS LKLPIGKGAS KFLKENSVND VLVKKRKTGK LPILHLQVNS  420
DGVEHNPNSV TGHVHKNPNP SADAHLLEHS QDLAARENQK YNKHVLHEFP SHSLIKAYET  480
PSSSLLQAHQ NGFQTISTED GCALQIDKDL SGQIMEGVSS DGIFEDFMGE KDTDQDLVFD  540
FLQENFLPQL SPHNEQFLFY LNDSNKHQNP HQNLDFQSNP SLRGGLSTDT ISGIDLWENP  600
KCTYGEEFLS SKILKGESER NSNGSSK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17569610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.12e-66AP2 family protein