PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10826_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 376aa MW: 42225.4 Da PI: 5.6612

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10826_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.5e-11	14	65	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W t E++ll++av+++G+++W++Ia +++ +t+ c++++++++ Neem_10826_f_3 14 QWGTLEELLLACAVNRHGTKSWDSIAMEVQnrsstlSSLTPQTCRDKFNDLR 65 599***************************9999999999999999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.458	7	65	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.1E-6	11	66	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-5	11	67	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.64E-6	12	86	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-10	14	64	IPR001005	SANT/Myb domain
CDD	cd00167	1.39E-5	15	64	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MAREQHETAS QQRQWGTLEE LLLACAVNRH GTKSWDSIAM EVQNRSSTLS SLTPQTCRDK 60 FNDLRRRFMS QNDAESTSLV PLVDHLRQIR VQELRAEVQR RDVSIVSLEL KVKRLEEERE 120 NSLKVEADLE RDRKVSPEIV AGKSSAVDGD GDSDERENRS FNESNSTTQK AETTNKKQND 180 DVEEEKEPKI KSEPEGENDP VRVRTGNEAD REDRDWSSNG KLNENGNGNV KGDDNEDNDK 240 TASKEKVESI KNKTSGVVGL SESNELWEDE SKKEGKQSSD VQSSASLSKS KRRRTVGAGV 300 RSGGTAGFSS GEEPDVEEVS PATKKVLAVK SEPLVRFLGM IRSHRLGSHF ERRLRSQRLK 360 LEQSQLSKLT SPGAYW

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MAREQHETAS QQRQWGTLEE LLLACAVNRH GTKSWDSIAM EVQNRSSTLS SLTPQTCRDK  60
FNDLRRRFMS QNDAESTSLV PLVDHLRQIR VQELRAEVQR RDVSIVSLEL KVKRLEEERE  120
NSLKVEADLE RDRKVSPEIV AGKSSAVDGD GDSDERENRS FNESNSTTQK AETTNKKQND  180
DVEEEKEPKI KSEPEGENDP VRVRTGNEAD REDRDWSSNG KLNENGNGNV KGDDNEDNDK  240
TASKEKVESI KNKTSGVVGL SESNELWEDE SKKEGKQSSD VQSSASLSKS KRRRTVGAGV  300
RSGGTAGFSS GEEPDVEEVS PATKKVLAVK SEPLVRFLGM IRSHRLGSHF ERRLRSQRLK  360
LEQSQLSKLT SPGAYW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445932.1	0.0	glutamic acid-rich protein
TrEMBL	V4TZZ9	1e-180	V4TZZ9_9ROSI; Uncharacterized protein
STRING	XP_006445932.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17089	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	8e-27	DNA-binding bromodomain-containing protein