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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_024102-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | WRKY | ||||||||
Protein Properties | Length: 685aa MW: 74870.9 Da PI: 6.6774 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 409 | 467 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ NNU_024102-RA 409 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGNHNHP 467 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 393 | 469 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-28 | 401 | 469 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 403 | 469 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 408 | 468 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-27 | 410 | 467 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MELVGIQHRR GGFLKRPEYS TGESCSGRVE LRFTSRCNVS VGREEKRRER IAAGLRCSLV 60 SDDREREEEN SGRKRWNEKG GGGLTIDSSE IGFFVTKPTA IKSFLTTNHP KWKHDPMDFP 120 VNLNCRDDQD SPVPSDEKRV DEMDFFSDKN RLKDFDAKAS IIDVKKEDSH GGVAPRLDLA 180 VNTGLHLLTA NTGSDQSTVD DGISPNADDK RAKSELAALQ TELDRMNEEN QRLRAMLSQV 240 TNNYSALQMH LVTLMQQQNR KAESAQDQEM LDGKLEEKKH EAGEGLIVPR QFMDLGPAAT 300 AETDEPSQSS SEGRSRDHSG SPHNNAEVVS KEYRQQKNSS NNEIVLFDQD KSDFGEDRGI 360 GREESPDQGW VANKIPKLNP SKNVDQTTEA TMRKARVSVR ARSEAPMITD GCQWRKYGQK 420 MAKGNPCPRA YYRCTMAAGC PVRKQVQRCA EDRSILITTY EGNHNHPLPP AAMAMASTTS 480 AAASMLLSGS MSSTDGLLNS NFLARTLLPC SSSMATISAS APFPTVTLDL THTPNPLQFQ 540 RPPSQFHVPF PNQAQSFPSQ PAPPLTQVFG QALYNQTKFS GLQLSQDVEP SQFVHQSPAP 600 APHQAQQPSL ADTVSAATAA ITADPNFTAA LAAAITSIIG GARPTNNSSS NDNNNNSSNN 660 NGNTTTTSNS NGNNNKISNS TFPGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 395 | 471 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010244474.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-147 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1U7Z9S9 | 0.0 | A0A1U7Z9S9_NELNU; probable WRKY transcription factor 31 | ||||
STRING | XP_010244474.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-122 | WRKY family protein |