PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022735-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 487aa    MW: 54335.6 Da    PI: 5.5827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022735-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.6e-09242266226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ++++C++++rtG Cky  +C F+H+
  NNU_022735-RA 242 GEKECQYYMRTGSCKYATNCWFHHP 266
                    7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035662194221IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.775194222IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5240267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76240268IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6242266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.91E-6242268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4246265IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
LSSPDRHNPH SVKSSNPEKC NLNLSSDEED CYVSDSETED TLSLGSIDLS QTKDPFEDDS  60
LNTEVLFQEE DGCGSLLGFQ VEAPSPPPGC TSHKVCLGST AVTEVAQETS TPTDKSTCGL  120
QHAQVIYLGD QNSLLSFHAE SLVAKQKEKE NERSLEQVIK EIEGEDDGLP GRVEETKYMV  180
SKGKEKENDR CQQKERQPEC KNHSRKGRRK FGNDSRHNHP QEKHVVGPPL EFNFLGLPIR  240
PGEKECQYYM RTGSCKYATN CWFHHPDPTT AEDDFLYICN NSVSTPLCSL GSSEHAPTSF  300
SLPRTSNETI SYMETSSSYV SVPFPEPQGL YQNSEWNSCQ SSQCPQEGNI RSPSVVLESN  360
ITKIMDGSSH QQKMPIEEGP VGPNPAIIRT HNRMCKNHHP KNRAPKLPVC NLSPMGLPLR  420
PVTCCRKLRN IRESSSPAYA YQMYLGLDSI QSMLHGLFKM GDLSEVSVPV GEFIRQFKLQ  480
NQTEFAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242061.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
RefseqXP_010242062.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
TrEMBLA0A1U7Z4260.0A0A1U7Z426_NELNU; zinc finger CCCH domain-containing protein 43-like isoform X1
STRINGXP_010242061.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-37C3H family protein