PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008920-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 58aa    MW: 6747.51 Da    PI: 4.1774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008920-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-081251145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++ +T++E+ l+++   +lG + W++Ia +++ gRt+ ++  +w 
    NNU_008920-RA 12 KLEFTEDEETLIYN---LLGDR-WSLIAGRIP-GRTAVEIEKYWT 51
                     57899999999976...59*99.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.771754IPR017877Myb-like domain
SMARTSM007179.8E-41156IPR001005SANT/Myb domain
CDDcd001672.33E-61450No hitNo description
PfamPF002495.7E-71451IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-71454IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-101552IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
MFVLEETSQG SKLEFTEDEE TLIYNLLGDR WSLIAGRIPG RTAVEIEKYW TSRYSTSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248700.11e-28PREDICTED: transcription factor TRY-like
TrEMBLA0A1U7ZK303e-27A0A1U7ZK30_NELNU; transcription factor TRY-like
STRINGXP_010248700.14e-28(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.15e-14MYB_related family protein