PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.N00061.1.p
Common NameMIMGU_mgv1a003712mg
Organism
Mimulus guttatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family ARR-B
Protein Properties Length: 591aa    MW: 65337.7 Da    PI: 5.7897
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.N00061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.81.4e-29222275155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r++Wt+eLH++Fv av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Migut.N00061.1.p 222 KQRVVWTTELHQQFVTAVNQL-GIDKAVPKKILDLMNVQGLTRENVASHLQKYRL 275
                       79*******************.********************************8 PP
2Response_reg77.74.1e-26371451109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ +++l+++l++  y ev+ ++ +e al+ll++++  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a +++  + + + 
  Migut.N00061.1.p  37 VLVVDDDPTCLRILEKMLRNCLY-EVTKCSRAEVALKLLRDNKdgFDVVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKRVVMKGVT 127
                       89*********************.***************888889**********************6654.8******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ +e+l +
  Migut.N00061.1.p 128 HGACDYLIKPVRMEALKN 145
                       *************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.21E-3534158IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.8E-4334179No hitNo description
SMARTSM004483.3E-3035147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.20436151IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2337145IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.38E-2838151No hitNo description
Gene3DG3DSA:1.10.10.602.6E-31219280IPR009057Homeodomain-like
PROSITE profilePS5129412.321219278IPR017930Myb domain
SuperFamilySSF466895.29E-21220279IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-26222275IPR006447Myb domain, plants
PfamPF002492.8E-8224274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MHLEVNPVPF AGSTASSWKS GGGGGVVSDQ FPAGLRVLVV DDDPTCLRIL EKMLRNCLYE  60
VTKCSRAEVA LKLLRDNKDG FDVVISDVHM PDMDGFKLLE HIGLEMDLPV IMMSADDSKR  120
VVMKGVTHGA CDYLIKPVRM EALKNIWQHV IRRKKHEWGD HNEKDVEQSG SVEDGERQQK  180
QLSENDDYSS SANEGSCKNS KKRKNEDEEG GERDEDSSSS KKQRVVWTTE LHQQFVTAVN  240
QLGIDKAVPK KILDLMNVQG LTRENVASHL QKYRLYLRRL SGQHHNGIGN SFMGPTDATF  300
GQLTSVNGLD LQSLASSSSQ LSPLGRSTNR TPVSVPLNDP RNIFSFESPN IRFVHGQQQQ  360
QHNGVNRGNL LHGIPTNMNM PIHPHSSQSN SLLTQMVQPP QQRNQIFNDG VFGQNGIDGF  420
APAYTSIPQP SSVVDFSRSQ RTFSTPVNNN FGIAGLASSN KGMLPQHDIG SEINGFVPTC  480
DVFTDVNQNN NRTDDWGFQS VGPTTFEAPQ HLNVQSGGLV NNSNLVPQNI PSDSLSRIRG  540
ERLPDVGFQN SLFSDQDDDL LSTYIKQNHQ DGSFDNEFGF DGYPLDDLPV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22218281164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMigut.N00061.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840547.10.0PREDICTED: two-component response regulator ARR2-like
SwissprotQ9ZWJ91e-157ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A022S0U10.0A0A022S0U1_ERYGU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-130response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]