PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Migut.G00183.1.p

Common Name

MIMGU_mgv1a000571mg

Organism

Mimulus guttatus

Taxonomic ID

4155

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

MYB_related

Protein Properties

Length: 1121aa MW: 125038 Da PI: 9.4325

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.G00183.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	7.9e-08	46	78	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rWT eE +++d ++ G++ Wk+Ia + +Rt Migut.G00183.1.p 46 RWTMEELTRFYDTYRKNGKD-WKKIATAVK-NRTM 78 9***************99.****9.96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.39E-9	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	8.7E-6	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-4	46	81	IPR009057	Homeodomain-like
Pfam	PF06584	2.2E-33	616	716	IPR033471	DIRP domain
SMART	SM01135	1.7E-58	616	717	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1121 aa Download sequence Send to blast
MGPPRKSRSV NKRYSSIPEL SPSKDGDGAK RSNNKKRKLS DKLGPRWTME ELTRFYDTYR 60 KNGKDWKKIA TAVKNRTMDM VEALYTMNRA YLSLPHGSAS VAGLIAMMTD HYSNLARSDS 120 DQESNDGAGS SRKPQKRARG KVQPTTPKAS EEQFISESPS IMSNYGCLSL LKKKRSGGSR 180 PRPVGKRTPR FPVSYSYEKD NRENYFSPNR QGLKLKANAD DDEVAHEIAI ALAEASQRGG 240 SPQVSGTPNR RAESVMSSPF RHGQRKHSVP EMLNTDEEDL EGSTEADPYA MESVSTCTTR 300 QKGKKIEGRK TEVDNLDDIK EECSGTEEDQ MLGSVRGKFN DTKRKKSKKV LFGRDEGSEF 360 DALQTLADLS LMMPTENENE SRVQFKDEPD DQIDESVPLE SLPPNPPREK RRSFGVRMKG 420 HLLSSSEVAS TKQSKTGKGS ILDIGSVPEQ SKDSHQPVTK VTRKKQKIQV SKIQKSEAHP 480 DINLSESPGI EAGDTGKKPM TKNKKSSHTS SPKLIKLSEN SSSADLKKEG SDSAQSAVQV 540 PVSNQVNLPT KVRSRRKMHL KTPVARKDLK FPDKISNDES NLPLGSLNDA ALKFKEKLSN 600 CLLSQRLRRW CIYEWFYSAI DYPWFAKREF VEYLNHVGLG HVPRLTRVEW GVIRSSLGKP 660 RRFSEQFLKE EKEKLNQYRD SVRKHYTELR EGVREGLPTD LARPLSVGQR VIAIHPKTRE 720 IHDGSVLTVD HSKCRVQFDR PELGVEFVMD IDCMPLNPFE NVPALLGRRT VGVDKFYETF 780 NELNINEQAK EFMKLSPGGN LDSTDGLYQL SSLGGPATLL NQKKVASANA NARARIGAAD 840 TANYMQASYS QPSTLAQVQA KEADIQALAE LTRALDKKEA VVLELRRMND DVLENQKDGD 900 CPLKESEPFK KRYAAVLIQL NEANEQVSSA LHCLRERNTY QGKYPLTLHR PLTSLADPSG 960 TLTSFNRSSA CQNQQTGSNL NEIMDCSRTK AQTMVDAAIQ AISSLKNREG NIEKIEEAID 1020 YVNDQLLSDD SSTLVTPKLS TNANDIDAQI PSELITKCIS TLLMIQKCTE RQFPPSDVAQ 1080 ILDSAVTSLQ PRSSQNMPVY AEIQKCVGII KNQILALIPT *

Sequence ? help Back to Top

Protein Sequence Length: 1121 aa Download sequence Send to blast

MGPPRKSRSV NKRYSSIPEL SPSKDGDGAK RSNNKKRKLS DKLGPRWTME ELTRFYDTYR  60
KNGKDWKKIA TAVKNRTMDM VEALYTMNRA YLSLPHGSAS VAGLIAMMTD HYSNLARSDS  120
DQESNDGAGS SRKPQKRARG KVQPTTPKAS EEQFISESPS IMSNYGCLSL LKKKRSGGSR  180
PRPVGKRTPR FPVSYSYEKD NRENYFSPNR QGLKLKANAD DDEVAHEIAI ALAEASQRGG  240
SPQVSGTPNR RAESVMSSPF RHGQRKHSVP EMLNTDEEDL EGSTEADPYA MESVSTCTTR  300
QKGKKIEGRK TEVDNLDDIK EECSGTEEDQ MLGSVRGKFN DTKRKKSKKV LFGRDEGSEF  360
DALQTLADLS LMMPTENENE SRVQFKDEPD DQIDESVPLE SLPPNPPREK RRSFGVRMKG  420
HLLSSSEVAS TKQSKTGKGS ILDIGSVPEQ SKDSHQPVTK VTRKKQKIQV SKIQKSEAHP  480
DINLSESPGI EAGDTGKKPM TKNKKSSHTS SPKLIKLSEN SSSADLKKEG SDSAQSAVQV  540
PVSNQVNLPT KVRSRRKMHL KTPVARKDLK FPDKISNDES NLPLGSLNDA ALKFKEKLSN  600
CLLSQRLRRW CIYEWFYSAI DYPWFAKREF VEYLNHVGLG HVPRLTRVEW GVIRSSLGKP  660
RRFSEQFLKE EKEKLNQYRD SVRKHYTELR EGVREGLPTD LARPLSVGQR VIAIHPKTRE  720
IHDGSVLTVD HSKCRVQFDR PELGVEFVMD IDCMPLNPFE NVPALLGRRT VGVDKFYETF  780
NELNINEQAK EFMKLSPGGN LDSTDGLYQL SSLGGPATLL NQKKVASANA NARARIGAAD  840
TANYMQASYS QPSTLAQVQA KEADIQALAE LTRALDKKEA VVLELRRMND DVLENQKDGD  900
CPLKESEPFK KRYAAVLIQL NEANEQVSSA LHCLRERNTY QGKYPLTLHR PLTSLADPSG  960
TLTSFNRSSA CQNQQTGSNL NEIMDCSRTK AQTMVDAAIQ AISSLKNREG NIEKIEEAID  1020
YVNDQLLSDD SSTLVTPKLS TNANDIDAQI PSELITKCIS TLLMIQKCTE RQFPPSDVAQ  1080
ILDSAVTSLQ PRSSQNMPVY AEIQKCVGII KNQILALIPT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.G00183.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858965.1	0.0	PREDICTED: protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A022RTT0	0.0	A0A022RTT0_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Migut.G00183.1.p

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]