PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

Trihelix

Protein Properties

Length: 397aa MW: 44330.4 Da PI: 5.8587

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.E00236.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.9	1.5e-24	76	160	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi +r+e++ ++++k++k+lW+ +s kmre+gf rsp++C++kw+nl k++kk k++++++ s ++ ++++e Migut.E00236.1.p 76 WVQEETRALILLRKEIDMMFNTSKSNKHLWDNISLKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNNQDGGGSGSAKMNCYKEIE 160 **********************************************************************888888999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-4	67	137	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.339	68	132	IPR017877	Myb-like domain
SMART	SM00717	6.9E-5	72	134	IPR001005	SANT/Myb domain
CDD	cd12203	2.85E-26	74	139	No hit	No description
Pfam	PF13837	3.2E-18	75	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MYMSEKPQPQ PESAIDFYTG DKQEAPHHSS NMIIHHIAAA DATSSGGDES AAAAAANNSA 60 NHPSSSLAPK KRAETWVQEE TRALILLRKE IDMMFNTSKS NKHLWDNISL KMREKGFDRS 120 PTMCTDKWRN LLKEFKKAKQ NNQDGGGSGS AKMNCYKEIE EILRERSKNG PTWKSSEDGG 180 GGGGPKVDDS FMQFADKGID DTSLTFGPVE ANGRSTLNLE RRLDHEGHPL AITAAEVVVA 240 SGASPWNWRE TPRSGEQTNT YDGRVITVKL GDFTKRIGID GSADGIKEAI KSAFGLRTKR 300 AFWLEDDDNV VRTLDRDMPL GNYTLHVDEG LTIKVCFYEE TGPMPVHAED KTFYNEDDFR 360 DFLSRRRWTC LREYNGFRNI DSMEELCPGV IYRGVN*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MYMSEKPQPQ PESAIDFYTG DKQEAPHHSS NMIIHHIAAA DATSSGGDES AAAAAANNSA  60
NHPSSSLAPK KRAETWVQEE TRALILLRKE IDMMFNTSKS NKHLWDNISL KMREKGFDRS  120
PTMCTDKWRN LLKEFKKAKQ NNQDGGGSGS AKMNCYKEIE EILRERSKNG PTWKSSEDGG  180
GGGGPKVDDS FMQFADKGID DTSLTFGPVE ANGRSTLNLE RRLDHEGHPL AITAAEVVVA  240
SGASPWNWRE TPRSGEQTNT YDGRVITVKL GDFTKRIGID GSADGIKEAI KSAFGLRTKR  300
AFWLEDDDNV VRTLDRDMPL GNYTLHVDEG LTIKVCFYEE TGPMPVHAED KTFYNEDDFR  360
DFLSRRRWTC LREYNGFRNI DSMEELCPGV IYRGVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-39	70	158	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00640	PBM	Transfer from MDP0000164819	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.E00236.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855256.1	0.0	PREDICTED: trihelix transcription factor GT-4-like
Swissprot	Q9FX53	1e-155	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A022Q4L3	0.0	A0A022Q4L3_ERYGU; Uncharacterized protein
STRING	Migut.E00236.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-156	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Migut.E00236.1.p
Entrez Gene	105974677

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]