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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Migut.D01179.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
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Family | LFY | ||||||||
Protein Properties | Length: 235aa MW: 26240.3 Da PI: 8.7531 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 404.6 | 1.1e-123 | 12 | 216 | 189 | 386 |
FLO_LFY 189 skkkqkrkkkkelkse........ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiaker 273 +k++ +r+++++++ +d+de ee+d+++ g+g +g+erqrehPfivtepgevargkknGLDYLf LyeqCrefL+qvqkiaker Migut.D01179.1.p 12 RKNNYRRRSSSSSS-GnmvwmddvDDDDEGEEDDDQNGGGGGGGNERQREHPFIVTEPGEVARGKKNGLDYLFYLYEQCREFLIQVQKIAKER 103 23333333333322.136677664444444455555556777889************************************************ PP FLO_LFY 274 GekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLs 366 GekcPtkvtnqvfryak aga+yinkPkmrhYvhCYalhcLde as alrr+fker+envGawrqacy+p+v +aa gwdidavfn+hprLs Migut.D01179.1.p 104 GEKCPTKVTNQVFRYAKAAGANYINKPKMRHYVHCYALHCLDEAASIALRRSFKERRENVGAWRQACYNPVVVVAAAYGWDIDAVFNSHPRLS 196 ********************************************************************************************* PP FLO_LFY 367 iWYvPtkLrqLChlerskas 386 iWYvPtkLrqLCh+ers+a+ Migut.D01179.1.p 197 IWYVPTKLRQLCHVERSNAA 216 *****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.7E-116 | 14 | 216 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSSTGGKKLR LRKNNYRRRS SSSSSGNMVW MDDVDDDDEG EEDDDQNGGG GGGGNERQRE 60 HPFIVTEPGE VARGKKNGLD YLFYLYEQCR EFLIQVQKIA KERGEKCPTK VTNQVFRYAK 120 AAGANYINKP KMRHYVHCYA LHCLDEAASI ALRRSFKERR ENVGAWRQAC YNPVVVVAAA 180 YGWDIDAVFN SHPRLSIWYV PTKLRQLCHV ERSNAAAAAA SSSVTGGGPD HLSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-105 | 54 | 234 | 2 | 194 | PROTEIN LEAFY |
2vy2_A | 1e-105 | 54 | 234 | 2 | 194 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the specification of floral meristem identity. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Migut.D01179.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY524042 | 0.0 | AY524042.1 Mimulus guttatus floricaula (FLO) mRNA, FLOB paralog, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012852657.1 | 1e-177 | PREDICTED: floricaula protein | ||||
Swissprot | O22621 | 1e-109 | ALF_PETHY; Protein ALF | ||||
TrEMBL | A0A022Q794 | 1e-156 | A0A022Q794_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.D01179.1.p | 1e-177 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6668 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-99 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Migut.D01179.1.p |
Publications ? help Back to Top | |||
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