PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe

Family

M-type_MADS

Protein Properties

Length: 135aa MW: 15048.9 Da PI: 9.5906

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Migut.C00785.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.9	1.3e-28	9	56	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien++nrqvt+skRrng++KKA+ELSvLCda+v+++++sst+kl++ Migut.C00785.1.p 9 KKIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIVMISSTQKLHD 56 78********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-36	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-27	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.787	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.36E-36	2	64	No hit	No description
PRINTS	PR00404	3.0E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-24	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KAHELSVLCD AKVSIVMISS TQKLHDTSAP 60 PSQDPHYGLV ENEGDYNSVL GFPHGGPRII ALRLPPNHHQ HQHHHHEQQH HQHHHPGLHS 120 GGAGSDLTTF ALLE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-16	1	55	1	55	MEF2C
5f28_B	3e-16	1	55	1	55	MEF2C
5f28_C	3e-16	1	55	1	55	MEF2C
5f28_D	3e-16	1	55	1	55	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Migut.C00785.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY524012	1e-118	AY524012.1 Mimulus guttatus deficiens (DEF) mRNA, DEFA paralog, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012842816.1	2e-46	PREDICTED: floral homeotic protein DEFICIENS-like
Swissprot	P23706	7e-32	DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBL	A0A2G2ZSE8	5e-48	A0A2G2ZSE8_CAPAN; Floral homeotic protein PMADS 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2314	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-31	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Migut.C00785.1.p

Publications ? help Back to Top
Schwarz-Sommer Z, et al. Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development. EMBO J., 1992. 11(1): p. 251-63 [PMID:1346760] Sommer H, et al. Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBO J., 1990. 9(3): p. 605-13 [PMID:1968830] Gallois JL, et al. Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gene, 2013. 526(2): p. 299-308 [PMID:23747397] Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H Multiple interactions amongst floral homeotic MADS box proteins. EMBO J., 1996. 15(16): p. 4330-43 [PMID:8861961]