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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr8g077950.4 | ||||||||
Common Name | MTR_8g077950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bZIP | ||||||||
Protein Properties | Length: 341aa MW: 36332.9 Da PI: 5.7208 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77.1 | 2.2e-24 | 258 | 320 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++l++e++kl+se+ Medtr8g077950.4 258 DRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSEN 320 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.9E-30 | 1 | 96 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.1E-6 | 118 | 229 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.6E-19 | 255 | 317 | No hit | No description |
SMART | SM00338 | 1.9E-21 | 258 | 322 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.3E-22 | 259 | 320 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.3 | 260 | 323 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-12 | 261 | 317 | No hit | No description |
CDD | cd14702 | 2.63E-24 | 263 | 313 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 265 | 280 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MGTKEDSTTK PSKTSSSTQE VPTPTVQPSY PDWSTSMQAY YNPGAAPPPY YASTVASPTP 60 HPYMWGGQHP MMAPYGTPVP YPAMFPPGNI YAHPSMVVTP SAMHQTTEFE GKGPDGKDKD 120 SSKKPKGTSA NTSAKAGEGG KAGSGSGNDG FSHSGDSGSE GSSNASDENQ QESARNKKGS 180 FDLMLVDGAN AQNNTTGPIS QSSVPGNPVV SIPATNLNIG MDLWNASSAG AEAAKMRHNQ 240 PGAPGAGALG EQWMQQDDRE LKRQKRKQSN RESARRSRLR KQAECEELQK RVEALGGENR 300 TLREELQKLS EECEKLTSEN DSIKEDLERL CGPEVVANLE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 274 | 280 | RRSRLRK |
2 | 274 | 281 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.9513 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr8g077950.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052082 | 0.0 | BT052082.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-M-2 unknown mRNA. | |||
GenBank | BT137808 | 0.0 | BT137808.1 Medicago truncatula clone JCVI-FLMt-12A19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629480.1 | 0.0 | G-box-binding factor 1 isoform X1 | ||||
Refseq | XP_024629610.1 | 0.0 | G-box-binding factor 1 isoform X1 | ||||
Swissprot | P42774 | 1e-105 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | G7LEV4 | 0.0 | G7LEV4_MEDTR; BZIP transcription factor family protein | ||||
STRING | AET03956 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 3e-49 | G-box binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr8g077950.4 |
Entrez Gene | 11419004 |