PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g023810.1
Common NameMTR_7g023810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 184aa    MW: 20975.2 Da    PI: 5.8634
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g023810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-2066125256
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                      r+R+t+t+ ql+ Le+ Fe  + +ps+e+++e+++ l    +++e+ V++WFqNrRa+ k
  Medtr7g023810.1  66 RQRWTPTPVQLQSLERIFEAeTGTPSKEKIKEITADLtkhgQISETSVYNWFQNRRARSK 125
                      79*****************88*************************************98 PP

2Wus_type_Homeobox87.71.2e-2866128365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++ Le+++++ + tP+ke+i++ita L+++G+i+++ V++WFQNr+aR++ kq
    Medtr7g023810.1  66 RQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQNRRARSKGKQ 128
                        79**********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.30162127IPR001356Homeobox domain
SuperFamilySSF466892.74E-1663129IPR009057Homeodomain-like
SMARTSM003891.9E-1064131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-1564131IPR009057Homeodomain-like
CDDcd000867.65E-1066128No hitNo description
PfamPF000464.8E-1866125IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEWQRNGFNQ NANVGMMQVN VMTNEQVETL RKQIAVYSVI SEQLIQTHKT LSSQQDLTLT  60
GSTRLRQRWT PTPVQLQSLE RIFEAETGTP SKEKIKEITA DLTKHGQISE TSVYNWFQNR  120
RARSKGKQQN NVNDEPEVET EVDSNDKKTE PEIVASQSAK NLCSQYLADL NSESDDSLRR  180
SRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARSKGKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g023810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492097.19e-73WUSCHEL-related homeobox 13-like
SwissprotO817882e-46WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLG7KVS31e-132G7KVS3_MEDTR; Homeodomain protein HB2
STRINGAES780401e-133(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-49WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]