PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g023810.1 | ||||||||
Common Name | MTR_7g023810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WOX | ||||||||
Protein Properties | Length: 184aa MW: 20975.2 Da PI: 5.8634 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.4 | 3.3e-20 | 66 | 125 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+t+t+ ql+ Le+ Fe + +ps+e+++e+++ l +++e+ V++WFqNrRa+ k Medtr7g023810.1 66 RQRWTPTPVQLQSLERIFEAeTGTPSKEKIKEITADLtkhgQISETSVYNWFQNRRARSK 125 79*****************88*************************************98 PP | |||||||
2 | Wus_type_Homeobox | 87.7 | 1.2e-28 | 66 | 128 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++ Le+++++ + tP+ke+i++ita L+++G+i+++ V++WFQNr+aR++ kq Medtr7g023810.1 66 RQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQNRRARSKGKQ 128 79**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.301 | 62 | 127 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.74E-16 | 63 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-10 | 64 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-15 | 64 | 131 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.65E-10 | 66 | 128 | No hit | No description |
Pfam | PF00046 | 4.8E-18 | 66 | 125 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEWQRNGFNQ NANVGMMQVN VMTNEQVETL RKQIAVYSVI SEQLIQTHKT LSSQQDLTLT 60 GSTRLRQRWT PTPVQLQSLE RIFEAETGTP SKEKIKEITA DLTKHGQISE TSVYNWFQNR 120 RARSKGKQQN NVNDEPEVET EVDSNDKKTE PEIVASQSAK NLCSQYLADL NSESDDSLRR 180 SRN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 127 | RRARSKGKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g023810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004492097.1 | 9e-73 | WUSCHEL-related homeobox 13-like | ||||
Swissprot | O81788 | 2e-46 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | G7KVS3 | 1e-132 | G7KVS3_MEDTR; Homeodomain protein HB2 | ||||
STRING | AES78040 | 1e-133 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 7e-49 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g023810.1 |
Entrez Gene | 11439774 |
Publications ? help Back to Top | |||
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