PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g011490.1
Common NameMTR_6g011490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 372aa    MW: 42592.4 Da    PI: 8.5139
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g011490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.3e-1263119155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Medtr6g011490.1  63 SRFRGVSRHRWTGRYEAHLWDkLSWNMtqKKKGKQ-GAYDDEESAARAYDLAALKYWG 119
                      789******************88888784446666.99***9**************98 PP
2AP252.99e-17162213155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Medtr6g011490.1 162 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 213
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-863119IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1563129IPR016177DNA-binding domain
SMARTSM003801.3E-1864133IPR001471AP2/ERF domain
PROSITE profilePS5103218.05764127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1264128IPR001471AP2/ERF domain
PRINTSPR003671.6E-56576IPR001471AP2/ERF domain
CDDcd000182.15E-1565129No hitNo description
CDDcd000188.22E-24162223No hitNo description
PfamPF008474.0E-12162213IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-18162223IPR016177DNA-binding domain
PROSITE profilePS5103218.795163221IPR001471AP2/ERF domain
SMARTSM003809.1E-27163227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-18163222IPR001471AP2/ERF domain
PRINTSPR003671.6E-5203223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEMMMKEENE RRKLISMADD DFQVISKRRR REPPSAALTL EDKQSQKQQI CQNSTTSTTK  60
RSSRFRGVSR HRWTGRYEAH LWDKLSWNMT QKKKGKQGAY DDEESAARAY DLAALKYWGT  120
MTVTNFPVSD YEEQVEIMQT MTKEEYLATL RRKSSGFSRG ASKYRGVARH HHNGRWEARI  180
GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGSHAITNF DLSTYMRWLK SSTENISETK  240
VEKLEVPESQ AAAFKSNYSP IEGSKTLALH NATYNSDYLN SAQKYEVFDN KTYQMSNTKS  300
SSSPTALGLL FRSTIFRELV QKNSDMSGDE TDWEDTKDKQ PLTAAASDDE LDGIFCDGIG  360
DTSFLKPQWT P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11030RRKLISMADDDFQVISKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g011490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9822832e-35JN982283.1 Pisum sativum WRI-33 marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641562.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A072U7A00.0A0A072U7A0_MEDTR; AP2 domain transcription factor
STRINGXP_004489378.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-84AP2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]