PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g075980.1 | ||||||||
Common Name | MTR_4g075980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 300aa MW: 34465.3 Da PI: 7.5755 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.6 | 1.6e-46 | 16 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPt+eel+++yLk+ v gkkl+ +vi ++iy+++P dLp k +e+ewyfF++rdkk+ +g r+nr+t++g+Wkatg+d+++++ Medtr4g075980.1 16 LPGFRFHPTEEELLDFYLKNMVVGKKLRY-DVIGFLNIYHHDPCDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTL 108 69**************************9.99***************8778899*************************************987 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +gl+ktLvfy+grap+g+ktdWvm+eyrl Medtr4g075980.1 109 sdPKRIIGLRKTLVFYEGRAPRGTKTDWVMNEYRL 143 666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.15E-56 | 14 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.409 | 15 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-25 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MASMEDINMC TEQITLPGFR FHPTEEELLD FYLKNMVVGK KLRYDVIGFL NIYHHDPCDL 60 PGLSKVGERE WYFFVPRDKK HGSGGRPNRT TEKGFWKATG SDRKIVTLSD PKRIIGLRKT 120 LVFYEGRAPR GTKTDWVMNE YRLPDNSPLP KDIVLCKIYR KATSLKVLEQ RAAEEEEMKQ 180 MVGSPTSSPP SSTDTISFNY TQQDQNMSMP LLFQQVIPKK ESEHEIIKTE DMVSLSSHEK 240 IVKDNKKPCG TSLQLPLGKD NVPELQLPIA ADWTQDTFWA QFNSPWQHNW SAYTNILNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-43 | 17 | 161 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.20846 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g075980.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC202572 | 0.0 | AC202572.7 Medicago truncatula clone mth2-161l14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607287.1 | 0.0 | NAC domain-containing protein 22 isoform X1 | ||||
Refseq | XP_024636722.1 | 0.0 | NAC domain-containing protein 22 isoform X2 | ||||
Swissprot | Q10S65 | 9e-99 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | G7JPL7 | 0.0 | G7JPL7_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES89484 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6214 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-108 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g075980.1 |
Entrez Gene | 11439696 |
Publications ? help Back to Top | |||
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