PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g075980.1
Common NameMTR_4g075980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 300aa    MW: 34465.3 Da    PI: 7.5755
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g075980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.61.6e-46161432128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPt+eel+++yLk+ v gkkl+  +vi  ++iy+++P dLp   k +e+ewyfF++rdkk+ +g r+nr+t++g+Wkatg+d+++++ 
  Medtr4g075980.1  16 LPGFRFHPTEEELLDFYLKNMVVGKKLRY-DVIGFLNIYHHDPCDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTL 108
                      69**************************9.99***************8778899*************************************987 PP

              NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +gl+ktLvfy+grap+g+ktdWvm+eyrl
  Medtr4g075980.1 109 sdPKRIIGLRKTLVFYEGRAPRGTKTDWVMNEYRL 143
                      666778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-5614161IPR003441NAC domain
PROSITE profilePS5100553.40915161IPR003441NAC domain
PfamPF023651.6E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASMEDINMC TEQITLPGFR FHPTEEELLD FYLKNMVVGK KLRYDVIGFL NIYHHDPCDL  60
PGLSKVGERE WYFFVPRDKK HGSGGRPNRT TEKGFWKATG SDRKIVTLSD PKRIIGLRKT  120
LVFYEGRAPR GTKTDWVMNE YRLPDNSPLP KDIVLCKIYR KATSLKVLEQ RAAEEEEMKQ  180
MVGSPTSSPP SSTDTISFNY TQQDQNMSMP LLFQQVIPKK ESEHEIIKTE DMVSLSSHEK  240
IVKDNKKPCG TSLQLPLGKD NVPELQLPIA ADWTQDTFWA QFNSPWQHNW SAYTNILNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-431716117168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.208460.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g075980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2025720.0AC202572.7 Medicago truncatula clone mth2-161l14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607287.10.0NAC domain-containing protein 22 isoform X1
RefseqXP_024636722.10.0NAC domain-containing protein 22 isoform X2
SwissprotQ10S659e-99NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLG7JPL70.0G7JPL7_MEDTR; NAC transcription factor-like protein
STRINGAES894840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-108NAC domain containing protein 36
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]